Evidence map›Paper›PMID 26199328›Full record

ArticlemBio2015

Deciphering the Regulatory Circuitry That Controls Reversible Lysine Acetylation in Salmonella enterica.

Kristy L Hentchel, Sandy Thao, Peter J Intile, Jorge C Escalante-Semerena

Open access · goldAbstract read
In one paragraph

Article in mBio, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Identification of Acetylated Proteins in Borrelia burgdorferi.Methods in molecular biology (Clifton, N.J.) · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Sirtuin-dependent reversible lysine acetylation of glutamine synthetases reveals an autofeedback loop in nitrogen metabolism.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Review
  11. Glucose Induces ECF Sigma Factor Genes,Frontiers in microbiology · 2016
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kristy L HentchelDepartment of Microbiology, University of Georgia, Athens, Georgia, USA.
Sandy ThaoDepartment of Bacteriology, University of Wisconsin, Madison, Wisconsin, USA.
Peter J IntileDepartment of Bacteriology, University of Wisconsin, Madison, Wisconsin, USA.
Jorge C Escalante-SemerenaDepartment of Microbiology, University of Georgia, Athens, Georgia, USA jcescala@uga.edu.
University of Georgia · USUniversity of Wisconsin–Madison · US

Funding

GRADUATE TRAINING IN MOLECULAR BIOSCIENCEST32GM007215 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HULL, CHRISTINA M · 1985 to 2018
$22.5M
Sirtuins and Metabolic Pathway IntegrationR01GM062203 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ESCALANTE, JORGE C · 2001 to 2017
$4.7M
Studies of a Bacterial Protein N-Lysine AcetyltransferaseF31GM083668 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI THAO, SANDY · 2008 to 2010
$55k
NIGMS NIH HHS F31 GM083668NIGMS NIH HHS F31-GM083668NIGMS NIH HHS R01 GM062203NIGMS NIH HHS R01-GM62203NIGMS NIH HHS T32 GM007215NIGMS NIH HHS T32-GM07215
6 · The paper itself

Abstract

unlabelledIn Salmonella enterica, the reversible lysine acetylation (RLA) system is comprised of the protein acetyltransferase (Pat) and sirtuin deacetylase (CobB). RLA controls the activities of many proteins, including the acetyl coenzyme A (acetyl-CoA) synthetase (Acs), by modulating the degree of Acs acetylation. We report that IolR, a myo-inositol catabolism repressor, activates the expression of genes encoding components of the RLA system. In vitro evidence shows that the IolR protein directly regulates pat expression. An iolR mutant strain displayed a growth defect in minimal medium containing 10 mM acetate, a condition under which RLA function is critical to control Acs activity. Increased levels of Pat, CobB, or Acs activity reversed the growth defect, suggesting the Pat/CobB ratio in an iolR strain is altered and that such a change affects the level of acetylated, inactive Acs. Results of quantitative reverse transcription-PCR (qRT-PCR) analyses of pat, cobB, and acs expression indicated that expression of the genes alluded to in the IolR-deficient strain was reduced 5-, 3-, and 2.6-fold, respectively, relative to the levels present in the strain carrying the iolR(+) allele. Acs activity in cell-free extracts from an iolR mutant strain was reduced ~25% relative to that of the iolR(+) strain. Glucose differentially regulated expression of pat, cobB, and acs. The catabolite repressor protein (Crp) positively regulated expression of pat while having no effect on cobB. IMPORTANCE: Reversible lysine acylation is used by cells of all domains of life to modulate the function of proteins involved in diverse cellular processes. Work reported herein begins to outline the regulatory circuitry that integrates the expression of genes encoding enzymes that control the activity of a central metabolic enzyme in C2 metabolism. Genetic analyses revealed effects on reversible lysine acylation that greatly impacted the growth behavior of the cell. This work provides the first insights into the complexities of the system responsible for controlling reversible lysine acylation at the transcriptional level in the enteropathogenic bacterium Salmonella enterica.

Indexed as

Gene Expression Regulation, BacterialGene Regulatory NetworksAcetylationCulture MediaGene DeletionGene Expression ProfilingLysineReal-Time Polymerase Chain ReactionSalmonella entericaCulture MediaLysine

Identifiers

PMID26199328
PMCPMC4513076
OpenAlexW2098560208

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.