Evidence map›Paper›PMID 26199317›Full record

ArticleHuman molecular genetics2015

Structural basis of glycogen branching enzyme deficiency and pharmacologic rescue by rational peptide design.

D Sean Froese, Amit Michaeli, Thomas J McCorvie, Tobias Krojer, Meitav Sasi, Esther Melaev, Amiram Goldblum, Maria Zatsepin, Alexander Lossos, Rafael Álvarez and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 89 citations in OpenAlex.

  1. Colocalization and functional analyses identifyAmerican journal of physiology. Endocrinology and metabolism · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Identification of Novel and Recurrent Variants inJournal of clinical medicine · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. The Structure of Maltooctaose-BoundMolecules (Basel, Switzerland) · 2023
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 4 countries.

D Sean FroeseStructural Genomics Consortium, Nuffield Department of Clinical Medicine, University of Oxford, OX3 7DQ, UK.
Amit MichaeliPepticom LTD, Jerusalem, Israel.
Thomas J McCorvieStructural Genomics Consortium, Nuffield Department of Clinical Medicine, University of Oxford, OX3 7DQ, UK.
Tobias KrojerStructural Genomics Consortium, Nuffield Department of Clinical Medicine, University of Oxford, OX3 7DQ, UK.
Meitav SasiDepartment of Neurology, Hadassah-Hebrew University Medical Center, Ein Kerem, Jerusalem, Israel.
Esther MelaevDepartment of Neurology, Hadassah-Hebrew University Medical Center, Ein Kerem, Jerusalem, Israel.
Amiram GoldblumPepticom LTD, Jerusalem, Israel, Institute for Drug Research, The Hebrew University of Jerusalem, Jerusalem, Israel.
Maria ZatsepinPepticom LTD, Jerusalem, Israel.
Alexander LossosDepartment of Neurology, Hadassah-Hebrew University Medical Center, Ein Kerem, Jerusalem, Israel.
Rafael ÁlvarezDepartment of Biology, University of the Balearic Islands, Palma de Mallorca E-07122, Spain and.
Pablo V EscribáDepartment of Biology, University of the Balearic Islands, Palma de Mallorca E-07122, Spain and.
Berge A MinassianProgram in Genetics and Genomic Medicine, The Hospital for Sick Children, University of Toronto, Toronto, Canada.
Frank von DelftStructural Genomics Consortium, Nuffield Department of Clinical Medicine, University of Oxford, OX3 7DQ, UK.
Or KakhlonDepartment of Neurology, Hadassah-Hebrew University Medical Center, Ein Kerem, Jerusalem, Israel, wyatt.yue@sgc.ox.ac.uk ork@hadassah.org.il.
Wyatt W YueStructural Genomics Consortium, Nuffield Department of Clinical Medicine, University of Oxford, OX3 7DQ, UK, wyatt.yue@sgc.ox.ac.uk ork@hadassah.org.il.
Hadassah Medical Center · ILGenomics England · GBUniversitat de les Illes Balears · ESUniversity of Oxford · GBHebrew University of Jerusalem · ILUniversity of Toronto · CA

Funding

Wellcome Trust 092809/Z/10/ZWellcome Trust 106169
6 · The paper itself

Abstract

Glycogen branching enzyme 1 (GBE1) plays an essential role in glycogen biosynthesis by generating α-1,6-glucosidic branches from α-1,4-linked glucose chains, to increase solubility of the glycogen polymer. Mutations in the GBE1 gene lead to the heterogeneous early-onset glycogen storage disorder type IV (GSDIV) or the late-onset adult polyglucosan body disease (APBD). To better understand this essential enzyme, we crystallized human GBE1 in the apo form, and in complex with a tetra- or hepta-saccharide. The GBE1 structure reveals a conserved amylase core that houses the active centre for the branching reaction and harbours almost all GSDIV and APBD mutations. A non-catalytic binding cleft, proximal to the site of the common APBD mutation p.Y329S, was found to bind the tetra- and hepta-saccharides and may represent a higher-affinity site employed to anchor the complex glycogen substrate for the branching reaction. Expression of recombinant GBE1-p.Y329S resulted in drastically reduced protein yield and solubility compared with wild type, suggesting this disease allele causes protein misfolding and may be amenable to small molecule stabilization. To explore this, we generated a structural model of GBE1-p.Y329S and designed peptides ab initio to stabilize the mutation. As proof-of-principle, we evaluated treatment of one tetra-peptide, Leu-Thr-Lys-Glu, in APBD patient cells. We demonstrate intracellular transport of this peptide, its binding and stabilization of GBE1-p.Y329S, and 2-fold increased mutant enzymatic activity compared with untreated patient cells. Together, our data provide the rationale and starting point for the screening of small molecule chaperones, which could become novel therapies for this disease.

Indexed as

Mutation, MissenseAmino Acid SequenceComputational BiologyGlycogen Debranching Enzyme SystemGlycogen Storage DiseaseGlycogen Storage Disease Type IVHumansMolecular Sequence DataNervous System DiseasesPeptidesProtein Structure, TertiarySequence AlignmentGBE1 protein, humanGlycogen Debranching Enzyme SystemPeptides

Identifiers

PMID26199317
PMCPMC4581599
OpenAlexW2147227257

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.