Evidence map›Paper›PMID 26199122›Full record

SynthesisJournal of lipid research2015

Genetic meta-analysis of 15,901 African Americans identifies variation in EXOC3L1 is associated with HDL concentration.

Matthew B Lanktree, Clara C Elbers, Yun Li, Guosheng Zhang, Qing Duan, Konrad J Karczewski, Yiran Guo, Vinicius Tragante, Kari E North, Mary Cushman and 7 more

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in Journal of lipid research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. EXOC3L1: A Novel Prognostic Biomarker Correlated with Immune Infiltration in Esophageal Squamous Cell Carcinoma.Medical science monitor : international medical journal of experimental and clinical research · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 11 institutions in 4 countries.

Matthew B LanktreeDepartment of Medicine, McMaster University, Hamilton, Ontario, Canada.
Clara C ElbersDepartment of Pediatrics, University of Pennsylvania School of Medicine, Philadelphia, PA Complex Genetics Section, Department of Medical Genetics (DBG), University Medical Center Utrecht, Utrecht, The Netherlands.
Yun LiDepartment of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC.
Guosheng ZhangDepartment of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC.
Qing DuanDepartment of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC.
Konrad J KarczewskiAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA.
Yiran GuoCenter for Applied Genomics, Abramson Research Center, Children's Hospital of Philadelphia, Philadelphia, PA.
Vinicius TraganteDepartment of Cardiology, Division Heart and Lungs, University Medical Center Utrecht, Utrecht, The Netherlands Department of Medical Genetics, Biomedical Genetics, University Medical Center Utrecht, Utrecht, The Netherlands.
Kari E NorthDepartment of Epidemiology, School of Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC.
Mary CushmanDepartments of Medicine and Pathology,University of Vermont, Colchester, VT.
Folkert W AsselbergsDepartment of Cardiology, Division Heart and Lungs, University Medical Center Utrecht, Utrecht, The Netherlands Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht, The Netherlands.
James G WilsonDepartment of Physiology and Biophysics, University of Mississippi Medical Center, Jackson, MS.
Leslie A LangeDepartment of Genetics, University of North Carolina School of Medicine at Chapel Hill, Chapel Hill, NC.
Fotios DrenosCentre for Cardiovascular Genetics, Institute of Cardiovascular Science, Faculty of Population Health Sciences, University College London, London, United Kindom.
Alex P ReinerDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA.
Michael R BarnesWilliam Harvey Research Institute, Barts and the London School of Medicine, Queen Mary University of London, London, United Kindom.
Brendan J KeatingDepartment of Pediatrics, University of Pennsylvania School of Medicine, Philadelphia, PA Division of Transplantation, Department of Surgery, University of Pennsylvania, Philadelphia, PA.
University of North Carolina at Chapel Hill · USUniversity Medical Center Utrecht · NLChildren's Hospital of Philadelphia · USFred Hutch Cancer Center · USMassachusetts General Hospital · USMcMaster University · CAUniversity College London · GBUniversity of Mississippi Medical Center · USUniversity of Pennsylvania · USUniversity of Vermont · USWilliam Harvey Research Institute · GB

Funding

Design and Analysis of Sequencing-based Studies for Complex Human TraitsR01HG006292 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, YUN · 2011 to 2015
$1.8M
Imputation and Analysis of Rare Variants in Admixed PopulationsR01HG006703 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, YUN · 2012 to 2014
$931k
Medical Research Council MC_UU_12013/5NHGRI NIH HHS R01 HG006292NHGRI NIH HHS R01HG006292NHGRI NIH HHS R01 HG006703NHGRI NIH HHS R01HG006703
6 · The paper itself

Abstract

Meta-analyses of European populations has successfully identified genetic variants in over 150 loci associated with lipid levels, but results from additional ethnicities remain limited. Previously, we reported two novel lipid loci identified in a sample of 7,657 African Americans using a gene-centric array including 50,000 SNPs in 2,100 candidate genes. Initial discovery and follow-up of signals with P < 10(-5) in additional African American samples confirmed CD36 and ICAM1. Using an additional 8,244 African American female samples from the Women's Health Initiative SNP Health Association Resource genome-wide association study dataset, we further examined the previous meta-analyses results by attempting to replicate 20 additional putative lipid signals with P < 10(-4). Replication confirmed rs868213, located in a splice donor region of exocyst complex component 3-like 1 (EXOC3L1) as a novel signal for HDL (additive allelic effect β = 0.02; P = 1.4 × 10(-8); meta-analyses of discovery and replication). EXOC3L1 is strongly expressed in vascular endothelium and forms part of the exocyst complex, a key facilitator of the trafficking of lipid receptors. Increasing sample sizes for genetic studies in nonEuropean populations will continue to improve our understanding of lipid metabolism.

Indexed as

Genome-Wide Association StudyBlack or African AmericanEndothelium, VascularGenetic Predisposition to DiseaseHumansLipoproteins, HDLPolymorphism, Single NucleotideVesicular Transport ProteinsWhite PeopleEXOC3 protein, humanLipoproteins, HDLVesicular Transport Proteinsexocyst complex component 3-like 1geneticshigh density lipoproteinvascular biology

Identifiers

PMID26199122
PMCPMC4548782
OpenAlexW2148616426

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.