Evidence map›Paper›PMID 26198256›Full record

ArticlePlant physiology2015

Cell Type-Specific Gene Expression Analyses by RNA Sequencing Reveal Local High Nitrate-Triggered Lateral Root Initiation in Shoot-Borne Roots of Maize by Modulating Auxin-Related Cell Cycle Regulation.

Peng Yu, Kai Eggert, Nicolaus von Wirén, Chunjian Li, Frank Hochholdinger

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
8.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
  2. Aerial root formation in Oaxacan maize (Frontiers in plant science · 2025
    Article
  3. Transcriptions ofFrontiers in plant science · 2025
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  4. Article
  5. Article
  6. ZmPILS6 is an auxin efflux carrier required for maize root morphogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  11. Review
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  15. Article
  16. Spatiotemporal Dynamics of Maize (Frontiers in microbiology · 2021
    Review
  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Peng YuDepartment of Plant Nutrition, China Agricultural University, Beijing 100193, China (P.Y., C.L.);Division of Crop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, 53113 Bonn, Germany (P.Y., F.H.); andMolecular Plant Nutrition, Leibniz Institute for Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany (K.E., N.v.W.).ORCID http://orcid.org/0000-0003-1670-8428
Kai EggertDepartment of Plant Nutrition, China Agricultural University, Beijing 100193, China (P.Y., C.L.);Division of Crop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, 53113 Bonn, Germany (P.Y., F.H.); andMolecular Plant Nutrition, Leibniz Institute for Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany (K.E., N.v.W.).
Nicolaus von WirénDepartment of Plant Nutrition, China Agricultural University, Beijing 100193, China (P.Y., C.L.);Division of Crop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, 53113 Bonn, Germany (P.Y., F.H.); andMolecular Plant Nutrition, Leibniz Institute for Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany (K.E., N.v.W.).ORCID http://orcid.org/0000-0002-4966-425X
Chunjian LiDepartment of Plant Nutrition, China Agricultural University, Beijing 100193, China (P.Y., C.L.);Division of Crop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, 53113 Bonn, Germany (P.Y., F.H.); andMolecular Plant Nutrition, Leibniz Institute for Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany (K.E., N.v.W.) lichj@cau.edu.cn hochholdinger@uni-bonn.de.ORCID http://orcid.org/0000-0001-7492-3949
Frank HochholdingerDepartment of Plant Nutrition, China Agricultural University, Beijing 100193, China (P.Y., C.L.);Division of Crop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, 53113 Bonn, Germany (P.Y., F.H.); andMolecular Plant Nutrition, Leibniz Institute for Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany (K.E., N.v.W.) lichj@cau.edu.cn hochholdinger@uni-bonn.de.ORCID http://orcid.org/0000-0002-5155-0884
Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DEUniversity of Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants have evolved a unique plasticity of their root system architecture to flexibly exploit heterogeneously distributed mineral elements from soil. Local high concentrations of nitrate trigger lateral root initiation in adult shoot-borne roots of maize (Zea mays) by increasing the frequency of early divisions of phloem pole pericycle cells. Gene expression profiling revealed that, within 12 h of local high nitrate induction, cell cycle activators (cyclin-dependent kinases and cyclin B) were up-regulated, whereas repressors (Kip-related proteins) were down-regulated in the pericycle of shoot-borne roots. In parallel, a ubiquitin protein ligase S-Phase Kinase-Associated Protein1-cullin-F-box protein(S-Phase Kinase-Associated Protein 2B)-related proteasome pathway participated in cell cycle control. The division of pericycle cells was preceded by increased levels of free indole-3-acetic acid in the stele, resulting in DR5-red fluorescent protein-marked auxin response maxima at the phloem poles. Moreover, laser-capture microdissection-based gene expression analyses indicated that, at the same time, a significant local high nitrate induction of the monocot-specific PIN-FORMED9 gene in phloem pole cells modulated auxin efflux to pericycle cells. Time-dependent gene expression analysis further indicated that local high nitrate availability resulted in PIN-FORMED9-mediated auxin efflux and subsequent cell cycle activation, which culminated in the initiation of lateral root primordia. This study provides unique insights into how adult maize roots translate information on heterogeneous nutrient availability into targeted root developmental responses.

Indexed as

Biological TransportCell CycleCell DivisionGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantIndoleacetic AcidsModels, BiologicalNitratesOrgan SpecificityPlant RootsPlant ShootsProteolysisSequence Analysis, RNATranscriptomeUbiquitinIndoleacetic AcidsNitratesUbiquitin

Identifiers

PMID26198256
PMCPMC4577424
OpenAlexW2124077350

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.