Evidence map›Paper›PMID 26198229›Full record

ArticleInternational journal of molecular sciences2015

An Overview of Practical Applications of Protein Disorder Prediction and Drive for Faster, More Accurate Predictions.

Xin Deng, Jordan Gumm, Suman Karki, Jesse Eickholt, Jianlin Cheng

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Deep learning in prediction of intrinsic disorder in proteins.Computational and structural biotechnology journal · 2022
    Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Xin DengMicrosoft Corporation, One Microsoft Way, Redmond, WA 98052, USA. xinde@microsoft.com.
Jordan GummDepartment of Computer Science, Central Michigan University, Mount Pleasant, MI 48859, USA. gumm1jn@cmich.edu.
Suman KarkiDepartment of Computer Science, Central Michigan University, Mount Pleasant, MI 48859, USA. karki1s@cmich.edu.
Jesse EickholtDepartment of Computer Science, Central Michigan University, Mount Pleasant, MI 48859, USA. eickh1jl@cmich.edu.
Jianlin ChengDepartment of Computer Science, University of Missouri, Columbia, MO 65211, USA. chengji@missouri.edu.

Funding

Integrated Prediction of Protein Struture at 1D, 2D and 3D LevelsR01GM093123 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI CHENG, JIANLIN · 2010 to 2023
$3.8M
NIGMS NIH HHS R01 GM093123NIGMS NIH HHS R01GM093123
6 · The paper itself

Abstract

Protein disordered regions are segments of a protein chain that do not adopt a stable structure. Thus far, a variety of protein disorder prediction methods have been developed and have been widely used, not only in traditional bioinformatics domains, including protein structure prediction, protein structure determination and function annotation, but also in many other biomedical fields. The relationship between intrinsically-disordered proteins and some human diseases has played a significant role in disorder prediction in disease identification and epidemiological investigations. Disordered proteins can also serve as potential targets for drug discovery with an emphasis on the disordered-to-ordered transition in the disordered binding regions, and this has led to substantial research in drug discovery or design based on protein disordered region prediction. Furthermore, protein disorder prediction has also been applied to healthcare by predicting the disease risk of mutations in patients and studying the mechanistic basis of diseases. As the applications of disorder prediction increase, so too does the need to make quick and accurate predictions. To fill this need, we also present a new approach to predict protein residue disorder using wide sequence windows that is applicable on the genomic scale.

Indexed as

Area Under CurveComputational BiologyDatabases, ProteinDrug DesignDrug DiscoveryIntrinsically Disordered ProteinsNeural Networks, ComputerProteinsIntrinsically Disordered ProteinsProteinsapplications of disorder predictiondeep networksmachine learningprotein disorder prediction

Identifiers

PMID26198229
PMCPMC4519904

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.