Evidence map›Paper›PMID 26196382›Full record

ArticlePloS one2015

The Association of LINE-1 Hypomethylation with Age and Centromere Positive Micronuclei in Human Lymphocytes.

Yoon Hee Cho, Hae Dong Woo, Yoonhee Jang, Virginia Porter, Sonja Christensen, Raymond F Hamilton, Hai Won Chung

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Observational
  6. Epigenetics, DNA damage, and aging.The Journal of clinical investigation · 2022
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Association of Sperm Methylation atFrontiers in genetics · 2019
    Article
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yoon Hee ChoCenter for Environmental Health Sciences, Department of Biomedical & Pharmaceutical Sciences, The University of Montana, Missoula, Montana, United States of America.
Hae Dong WooMolecular Epidemiology Branch, Division of Cancer Epidemiology and Prevention, Research Institute, National Cancer Center, Goyang-si, Gyeonggi-do, Korea.
Yoonhee JangDepartment of Psychology, The University of Montana, Missoula, Montana, United States of America.
Virginia PorterCenter for Environmental Health Sciences, Department of Biomedical & Pharmaceutical Sciences, The University of Montana, Missoula, Montana, United States of America.
Sonja ChristensenCenter for Environmental Health Sciences, Department of Biomedical & Pharmaceutical Sciences, The University of Montana, Missoula, Montana, United States of America.
Raymond F HamiltonCenter for Environmental Health Sciences, Department of Biomedical & Pharmaceutical Sciences, The University of Montana, Missoula, Montana, United States of America.
Hai Won ChungDepartment of Molecular Epidemiology, School of Public Health, Seoul National University, Gwanak-gu, Seoul, Korea.

Funding

Molecular Histology and Fluorescent ImagingP30GM103338 · NIGMS · UNIVERSITY OF MONTANA · PI ROBERTS, KEVAN · 2013 to 2017
$5.6M
NIGMS NIH HHS P30 GM103338NIGMS NIH HHS P30GM103338
6 · The paper itself

Abstract

Global hypomethylation in white blood cell (WBC) DNA has recently been proposed as a potential biomarker for determining cancer risk through genomic instability. However, the amplitude of the changes associated with age and the impacts of environmental factors on DNA methylation are unclear. In this study, we investigated the association of genomic hypomethylation with age, cigarette use, drinking status and the presence of centromere positive micronuclei (MNC+)-a biomarker for age-dependent genomic instability. Genomic hypomethylation of the repetitive element LINE-1 was measured in WBC DNA from 32 healthy male volunteers using the pyrosequencing assay. We also measured MNC+ with the micronucleus-centromere assay using a pan-centromeric probe. Possibly due to the small sample size and resulting low statistical power, smoking and drinking status had no significant effect on LINE-1 hypomethylation or the occurrence of MNC+. Consequently, we did not include them in further analyses. In contrast, LINE-1 hypomethylation and age significantly predicted MNC+; therefore, we examined whether LINE-1 hypomethylation plays a role in MNC+ formation by age, since genomic hypomethylation is associated with genomic instability. However, LINE-1 hypomethylation did not significantly mediate the effect of age on MNC+. Our data indicate that the repetitive element LINE-1 is demethylated with age and increasing MNC+ frequency, but additional studies are needed to fully understand the relation between genomic DNA hypomethylation, age and genomic instability.

Indexed as

DNA MethylationGenomic InstabilityAdultAgingAlcohol DrinkingCell NucleusCentromereHumansLong Interspersed Nucleotide ElementsLymphocytesMaleMiddle AgedSmoking

Identifiers

PMID26196382
PMCPMC4510364

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.