Evidence map›Paper›PMID 26196125›Full record

ArticlePloS one2015

Eukaryotic rRNA Modification by Yeast 5-Methylcytosine-Methyltransferases and Human Proliferation-Associated Antigen p120.

Gabrielle Bourgeois, Michel Ney, Imre Gaspar, Christelle Aigueperse, Matthias Schaefer, Stefanie Kellner, Mark Helm, Yuri Motorin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 112 citations in OpenAlex.

  1. Review
  2. Article
  3. mBiology direct · 2026
    Review
  4. RNA modifications and cancer ferroptosis.Cancer cell international · 2026
    Review
  5. Review
  6. NSUN7 is a catalytically inactive RNA mNature communications · 2025
    Article
  7. Article
  8. Review
  9. Article
  10. Global Co-regulatory Cross Talk Between mMolecular neurobiology · 2025
    Article
  11. Article
  12. Article
  13. The role of m5C, m1A and m7G modifications in tumors of urinary system.Frontiers in cell and developmental biology · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Gabrielle BourgeoisLaboratoire IMoPA, UMR 7365 UL-CNRS, BioPole de UL, Vandoeuvre-les-Nancy, France.
Michel NeyLaboratoire IMoPA, UMR 7365 UL-CNRS, BioPole de UL, Vandoeuvre-les-Nancy, France.
Imre GasparEMBL Heidelberg, Meyerhofstraße 1, 69117, Heidelberg, Germany.
Christelle AigueperseLaboratoire IMoPA, UMR 7365 UL-CNRS, BioPole de UL, Vandoeuvre-les-Nancy, France.
Matthias SchaeferDivision of Epigenetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Stefanie KellnerInstitute of Pharmacy and Biochemistry, Johannes Gutenberg-University Mainz, Mainz, Germany.
Mark HelmInstitute of Pharmacy and Biochemistry, Johannes Gutenberg-University Mainz, Mainz, Germany.
Yuri MotorinLaboratoire IMoPA, UMR 7365 UL-CNRS, BioPole de UL, Vandoeuvre-les-Nancy, France.
Centre National de la Recherche Scientifique · FRIngénierie Moléculaire et Physiopathologie Articulaire · FRJohannes Gutenberg University Mainz · DEEuropean Molecular Biology Organization · DEHeidelberg University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modified nucleotide 5-methylcytosine (m5C) is frequently present in various eukaryotic RNAs, including tRNAs, rRNAs and in other non-coding RNAs, as well as in mRNAs. RNA:m5C-methyltranferases (MTases) Nop2 from S. cerevisiae and human proliferation-associated nucleolar antigen p120 are both members of a protein family called Nop2/NSUN/NOL1. Protein p120 is well-known as a tumor marker which is over-expressed in various cancer tissues. Using a combination of RNA bisulfite sequencing and HPLC-MS/MS analysis, we demonstrated here that p120 displays an RNA:m5C- MTase activity, which restores m5C formation at position 2870 in domain V of 25S rRNA in a nop2Δ yeast strain. We also confirm that yeast proteins Nop2p and Rcm1p catalyze the formation of m5C in domains V and IV, respectively. In addition, we do not find any evidence of m5C residues in yeast 18S rRNA. We also performed functional complementation of Nop2-deficient yeasts by human p120 and studied the importance of different sequence and structural domains of Nop2 and p120 for yeast growth and m5C-MTase activity. Chimeric protein formed by Nop2 and p120 fragments revealed the importance of Nop2 N-terminal domain for correct protein localization and its cellular function. We also validated that the presence of Nop2, rather than the m5C modification in rRNA itself, is required for pre-rRNA processing. Our results corroborate that Nop2 belongs to the large family of pre-ribosomal proteins and possesses two related functions in pre-rRNA processing: as an essential factor for cleavages and m5C:RNA:modification. These results support the notion of quality control during ribosome synthesis by such modification enzymes.

Indexed as

5-MethylcytosineHumansMethyltransferasesNuclear ProteinsProtein BindingProtein Structure, TertiaryRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinstRNA Methyltransferases5-MethylcytosineMethyltransferasesNOP2 protein, humanNOP2 protein, S cerevisiaeNuclear ProteinsRNA, RibosomalRNA, ribosomal, 25SSaccharomyces cerevisiae ProteinstRNA Methyltransferases

Identifiers

PMID26196125
PMCPMC4510066
OpenAlexW1549435121

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.