Evidence map›Paper›PMID 26195667›Full record

ArticleThe Journal of cell biology2015

Ypt1/Rab1 regulates Hrr25/CK1δ kinase activity in ER-Golgi traffic and macroautophagy.

Juan Wang, Saralin Davis, Shekar Menon, Jinzhong Zhang, Jingzhen Ding, Serena Cervantes, Elizabeth Miller, Yu Jiang, Susan Ferro-Novick

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 73 citations in OpenAlex.

  1. Review
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  6. Mechanisms of autophagosome formation.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
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  15. Stage-Specific Genetic Interaction betweenInternational journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Juan WangDepartment of Cellular and Molecular Medicine, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093.
Saralin DavisDepartment of Cellular and Molecular Medicine, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093.
Shekar MenonDepartment of Cellular and Molecular Medicine, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093.
Jinzhong ZhangDepartment of Cellular and Molecular Medicine, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093.
Jingzhen DingDepartment of Cellular and Molecular Medicine, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093.
Serena CervantesDepartment of Cellular and Molecular Medicine, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093.
Elizabeth MillerDepartment of Biological Sciences, Columbia University, New York, NY 10027.
Yu JiangDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261.
Susan Ferro-NovickDepartment of Cellular and Molecular Medicine, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093 sfnovick@ucsd.edu.
Howard Hughes Medical Institute · USUniversity of California, San Diego · USColumbia University · USUniversity of Pittsburgh · US

Funding

Molecular mechanisms of cargo capture into ER-derived transport vesiclesR01GM085089 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI BULINSKI, JEANNETTE CHLOE, MILLER, ELIZABETH A. · 2008 to 2016
$2.4M
The role of a CK1 kinase in membrane trafficR01GM114111 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FERRO-NOVICK, SUSAN · 2015 to 2018
$1.5M
The role of arachidonic acid in estrogen mediated mTOR activationR21CA169186 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JIANG, YU · 2013 to 2014
$361k
Howard Hughes Medical InstituteNCI NIH HHS R21 CA169186NCI NIH HHS R21CA169186NIGMS NIH HHS R01 GM085089NIGMS NIH HHS R01GM085089NIGMS NIH HHS R01 GM114111
6 · The paper itself

Abstract

ER-derived COPII-coated vesicles are conventionally targeted to the Golgi. However, during cell stress these vesicles also become a membrane source for autophagosomes, distinct organelles that target cellular components for degradation. How the itinerary of COPII vesicles is coordinated on these pathways remains unknown. Phosphorylation of the COPII coat by casein kinase 1 (CK1), Hrr25, contributes to the directional delivery of ER-derived vesicles to the Golgi. CK1 family members are thought to be constitutively active kinases that are regulated through their subcellular localization. Instead, we show here that the Rab GTPase Ypt1/Rab1 binds and activates Hrr25/CK1δ to spatially regulate its kinase activity. Consistent with a role for COPII vesicles and Hrr25 in membrane traffic and autophagosome biogenesis, hrr25 mutants were defective in ER-Golgi traffic and macroautophagy. These studies are likely to serve as a paradigm for how CK1 kinases act in membrane traffic.

Indexed as

AutophagyCasein Kinase ICOP-Coated VesiclesEndoplasmic ReticulumGolgi ApparatusHumansProtein Transportrab GTP-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCasein Kinase IHRR25 protein, S cerevisiaerab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsYPT1 protein, S cerevisiae

Identifiers

PMID26195667
PMCPMC4508898
OpenAlexW2154839327

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.