Evidence map›Paper›PMID 26193304›Full record

ArticleViruses2015

Tsv-N1: A Novel DNA Algal Virus that Infects Tetraselmis striata.

António Pagarete, Théophile Grébert, Olga Stepanova, Ruth-Anne Sandaa, Gunnar Bratbak

Abstract read
In one paragraph

Article in Viruses, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The polinton-like supergroup of viruses: evolution, molecular biology, and taxonomy.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  5. Natural history of eukaryotic DNA viruses with double jelly-roll major capsid proteins.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Endogenous virophages are active and mitigate giant virus infection in the marine protistProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Article
  10. Endogenous DNA viruses take center stage in eukaryotic genome evolution.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Large-scale invasion of unicellular eukaryotic genomes by integrating DNA viruses.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Frontiers in microbiology · 2023
    Review
  13. Article
  14. Viruses Defined by the Position of the Virosphere within the Replicator Space.Microbiology and molecular biology reviews : MMBR · 2021
    Article
  15. Article
  16. High-Quality Draft Genome Sequence of the Green AlgaMicrobiology resource announcements · 2019
    Article
  17. Viruses · 2018
    Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

António PagareteDepartment of Biology, University of Bergen, Bergen 5006, Norway. antonio.pagarete@uib.no.
Théophile GrébertDepartment of Biology, University of Bergen, Bergen 5006, Norway. theophile.grebert@ens-lyon.org.
Olga StepanovaInstitute of Natural and Technical Systems, Russian Academy of Sciences, Sevastopol 299000, Russia. solar-ua@ya.ru.
Ruth-Anne SandaaDepartment of Biology, University of Bergen, Bergen 5006, Norway. Ruth.Sandaa@uib.no.
Gunnar BratbakDepartment of Biology, University of Bergen, Bergen 5006, Norway. bratbak@uib.no.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Numbering in excess of 10 million per milliliter of water, it is now undisputed that aquatic viruses are one of the major factors shaping the ecology and evolution of Earth's microbial world. Nonetheless, environmental viral diversity and roles remain poorly understood. Here we report the first thorough characterization of a virus (designated TsV) that infects the coastal marine microalga Tetraselmis striata. Unlike previously known microalgae-infecting viruses, TsV is a small (60 nm) DNA virus, with a 31 kb genome. From a range of eight different strains belonging to the Chlamydomonadaceae family, TsV was only able to infect T. striata. Gene expression dynamics revealed an up-regulation of viral transcripts already 1 h post-infection (p.i.). First clear signs of infection were observed 24 h p.i., with the appearance of viral factories inside the nucleus. TsV assembly was exclusively nuclear. TsV-N1 genome revealed very different from previously known algae viruses (Phycodnaviridae). Putative function and/or homology could be resolved for only 9 of the 33 ORFs encoded. Among those was a surprising DNA polymerase type Delta (only found in Eukaryotes), and two genes with closest homology to genes from human parasites of the urogenital tract. These results support the idea that the diversity of microalgae viruses goes far beyond the Phycodnaviridae family and leave the door open for future studies on implications of microalgae viruses for human health.

Indexed as

ChlorophytaGenome, ViralHost SpecificityHumansMolecular Sequence DataPhycodnaviridaePhylogenyhorizontal gene transferinfection dynamicsmicroalgaeviral factoryviral genomicsviral taxonomyviruses

Identifiers

PMID26193304
PMCPMC4517135

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.