Evidence map›Paper›PMID 26193121›Full record

ArticleeLife2015

Functional evidence implicating chromosome 7q22 haploinsufficiency in myelodysplastic syndrome pathogenesis.

Jasmine C Wong, Kelley M Weinfurtner, Maria Del Pilar Alzamora, Scott C Kogan, Michael R Burgess, Yan Zhang, Joy Nakitandwe, Jing Ma, Jinjun Cheng, Shann-Ching Chen and 6 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Jasmine C WongDepartment of Pediatrics, University of California, San Francisco, San Francisco, United States.
Kelley M WeinfurtnerDepartment of Pediatrics, University of California, San Francisco, San Francisco, United States.
Maria Del Pilar AlzamoraDepartment of Pediatrics, University of California, San Francisco, San Francisco, United States.
Scott C KoganDepartment of Laboratory Medicine, University of California, San Francisco, San Francisco, United States.
Michael R BurgessDivision of Hematology/Oncology, University of California, San Francisco, San Francisco, United States.
Yan ZhangUnit of Hematopoietic Stem Cell and Transgenic Animal Models, Institut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, China.
Joy NakitandweDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, United States.
Jing MaDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, United States.
Jinjun ChengDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, United States.
Shann-Ching ChenDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, United States.
Theodore T HoEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, Department of Medicine, University of California, San Francisco, San Francisco, United States.
Johanna FlachEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, Department of Medicine, University of California, San Francisco, San Francisco, United States.
Damien ReynaudEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, Department of Medicine, University of California, San Francisco, San Francisco, United States.
Emmanuelle PasseguéEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, Department of Medicine, University of California, San Francisco, San Francisco, United States.
James R DowningDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, United States.
Kevin ShannonDepartment of Pediatrics, University of California, San Francisco, San Francisco, United States.
University of California, San Francisco · USSt. Jude Children's Research Hospital · USBroad Center · USChinese Academy of Sciences · CN

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
UCCRC--ETIOLOGY OF TREATMENT-INDUCED SECONDARY LEUKEMIAP01CA040046 · NCI · UNIVERSITY OF CHICAGO · PI LARSON, RICHARD A · 1985 to 2012
$19.9M
Molecular and Cellular Mechanisms in CancerT32CA108462 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOGA, ANDREI · 2004 to 2024
$10.4M
STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008284 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KORTEMME, TANJA · 1988 to 2022
$10.1M
MOUSE MODELS OF MYELOID LEUKEMIAU01CA084221 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHANNON, KEVIN M. · 1999 to 2009
$8.7M
The Role of JunB in Hematopoietic Stem Cell HomeostasisR01HL092471 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PASSEGUE, EMMANUELLE · 2008 to 2016
$3.6M
Translational Investigation of KRas & NF1 in Myeloid LeukemiaR37CA072614 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHANNON, KEVIN M. · 2007 to 2016
$3.4M
Integrative Program in Complex Biological System (ipCBS)T32EB009383 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARSHALL, WALLACE, WEINER, ORION D · 2009 to 2022
$3.2M
NCI NIH HHS P01 CA040046NCI NIH HHS P01 CA40046NCI NIH HHS P30 CA021765NCI NIH HHS R37 CA072614NCI NIH HHS R37 CA72614NCI NIH HHS T32 CA108462NCI NIH HHS U01 CA084221NHLBI NIH HHS R01 HL092471NIBIB NIH HHS T32 EB009383NIGMS NIH HHS T32 GM008284
6 · The paper itself

Abstract

Chromosome 7 deletions are highly prevalent in myelodysplastic syndrome (MDS) and likely contribute to aberrant growth through haploinsufficiency. We generated mice with a heterozygous germ line deletion of a 2-Mb interval of chromosome band 5A3 syntenic to a commonly deleted segment of human 7q22 and show that mutant hematopoietic cells exhibit cardinal features of MDS. Specifically, the long-term hematopoietic stem cell (HSC) compartment is expanded in 5A3(+/del) mice, and the distribution of myeloid progenitors is altered. 5A3(+/del) HSCs are defective for lymphoid repopulating potential and show a myeloid lineage output bias. These cell autonomous abnormalities are exacerbated by physiologic aging and upon serial transplantation. The 5A3 deletion partially rescues defective repopulation in Gata2 mutant mice. 5A3(+/del) hematopoietic cells exhibit decreased expression of oxidative phosphorylation genes, increased levels of reactive oxygen species, and perturbed oxygen consumption. These studies provide the first functional data linking 7q22 deletions to MDS pathogenesis.

Indexed as

Chromosomes, Human, Pair 7Genetic LociHaploinsufficiencyAnimalsDisease Models, AnimalHumansMice, Inbred C57BLMyelodysplastic SyndromesOxidative PhosphorylationOxygenReactive Oxygen SpeciesSequence DeletionOxygenReactive Oxygen Specieschromosome engineeringhaploinsufficiencyhematopoietic stem cellshuman biologymedicinemonosomy 7mousemyelodysplastic syndromeoxidative phosphorylation

Identifiers

PMID26193121
PMCPMC4569895
OpenAlexW2149685951

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.