Evidence map›Paper›PMID 26192916›Full record

ArticleNature genetics2015

Genomic landscape of cutaneous T cell lymphoma.

Jaehyuk Choi, Gerald Goh, Trent Walradt, Bok S Hong, Christopher G Bunick, Kan Chen, Robert D Bjornson, Yaakov Maman, Tiffany Wang, Jesse Tordoff and 14 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 239 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
239citing papers in PubMed, 5 pooled it
41.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

239 citing papers in PubMed, 5 syntheses or guidelines pooled it, 407 citations in OpenAlex.

  1. A genetic profiling guideline to support diagnosis and clinical management of lymphomas.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Guideline
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  8. Pembrolizumab in Relapsed and Refractory Mycosis Fungoides and Sézary Syndrome: A Multicenter Phase II Study.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2020
    Trial
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179 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 3 institutions in 1 country.

Jaehyuk ChoiDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Gerald GohHoward Hughes Medical Institute, Yale School of Medicine, New Haven, Connecticut, USA.ORCID http://orcid.org/0000-0002-3832-6466
Trent WalradtDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Bok S HongDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Christopher G BunickDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Kan ChenDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Robert D BjornsonDepartment of Computer Science, Yale University, New Haven, Connecticut, USA.
Yaakov MamanHoward Hughes Medical Institute, Yale School of Medicine, New Haven, Connecticut, USA.
Tiffany WangDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Jesse TordoffDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Kacie CarlsonDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
John D OvertonYale Center for Genome Analysis, Yale School of Medicine, New Haven, Connecticut, USA.
Kristina J LiuDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Julia M LewisDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Lesley DevineDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, Connecticut, USA.
Lisa BarbarottaDepartment of Medicine (Hematology), Yale School of Medicine, New Haven, Connecticut, USA.
Francine M FossDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Antonio SubtilDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Eric C VonderheidDepartment of Oncology, Sydney Kimmel Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Richard L EdelsonDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
David G SchatzHoward Hughes Medical Institute, Yale School of Medicine, New Haven, Connecticut, USA.
Titus J BoggonDepartment of Pharmacology, Yale School of Medicine, New Haven, Connecticut, USA.
Michael GirardiDepartment of Dermatology, Yale School of Medicine, New Haven, Connecticut, USA.
Richard P LiftonHoward Hughes Medical Institute, Yale School of Medicine, New Haven, Connecticut, USA.
Yale University · USHoward Hughes Medical Institute · USJohns Hopkins University · US

Funding

Yale SPORE in Skin CancerP50CA121974 · NCI · YALE UNIVERSITY · PI DAVID F STERN · 2006 to 2026
$43.9M
T Cell Regulation of Cutaneous MalignancyR01CA102703 · NCI · YALE UNIVERSITY · PI GIRARDI, MICHAEL · 2003 to 2020
$5.5M
Immunoglobulin and T Cell Receptor Gene AssemblyR37AI032524 · NIAID · YALE UNIVERSITY · PI SCHATZ, DAVID G. · 2007 to 2016
$3.5M
Howard Hughes Medical InstituteNCI NIH HHS P50 CA121974NCI NIH HHS R01 CA102703NIAID NIH HHS R37 AI032524
6 · The paper itself

Abstract

Cutaneous T cell lymphoma (CTCL) is a non-Hodgkin lymphoma of skin-homing T lymphocytes. We performed exome and whole-genome DNA sequencing and RNA sequencing on purified CTCL and matched normal cells. The results implicate mutations in 17 genes in CTCL pathogenesis, including genes involved in T cell activation and apoptosis, NF-κB signaling, chromatin remodeling and DNA damage response. CTCL is distinctive in that somatic copy number variants (SCNVs) comprise 92% of all driver mutations (mean of 11.8 pathogenic SCNVs versus 1.0 somatic single-nucleotide variant per CTCL). These findings have implications for new therapeutics.

Indexed as

DNA Copy Number VariationsDNA Mutational AnalysisExomeGene ExpressionGene FrequencyGenetic Association StudiesGenomicsHumansLymphoma, T-Cell, CutaneousMutation, MissensePolymorphism, Single NucleotideSkin NeoplasmsTumor Cells, Cultured

Identifiers

PMID26192916
PMCPMC4552614
OpenAlexW980720098

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.