Evidence map›Paper›PMID 26192600›Full record

ArticleNature chemical biology2015

A new metal binding domain involved in cadmium, cobalt and zinc transport.

Aaron T Smith, Dulmini Barupala, Timothy L Stemmler, Amy C Rosenzweig

Abstract read
In one paragraph

Article in Nature chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Review
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  8. Review
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  11. The CopA2-Type PFrontiers in microbiology · 2021
    Article
  12. Prediction of Metal Ion Binding Sites of Transmembrane Proteins.Computational and mathematical methods in medicine · 2021
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. CuProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Aaron T Smith1] Department of Molecular Biosciences, Northwestern University, Evanston, Illinois, USA. [2] Department of Chemistry, Northwestern University, Evanston, Illinois, USA.
Dulmini BarupalaDepartment of Pharmaceutical Sciences and Cardiovascular Research Institute, Wayne State University, School of Medicine, Detroit, Michigan, USA.
Timothy L StemmlerDepartment of Pharmaceutical Sciences and Cardiovascular Research Institute, Wayne State University, School of Medicine, Detroit, Michigan, USA.
Amy C Rosenzweig1] Department of Molecular Biosciences, Northwestern University, Evanston, Illinois, USA. [2] Department of Chemistry, Northwestern University, Evanston, Illinois, USA.

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Structure and Specificity in Metal Ion HomeostasisR01GM058518 · NIGMS · NORTHWESTERN UNIVERSITY · PI ROSENZWEIG, AMY C. · 1999 to 2015
$4.4M
Structural Insights into the Function of FrataxinR01DK068139 · NIDDK · WAYNE STATE UNIVERSITY · PI STEMMLER, TIMOTHY LOUIS · 2005 to 2015
$3.5M
Detroit Cardiovascular Training ProgramT32HL120822 · NHLBI · WAYNE STATE UNIVERSITY · PI LEVY, PHILLIP DAVID · 2014 to 2023
$1.8M
Characterization of the P1B-5ATPase Hemerythrin-like and Metal-Binding DomainsF32GM105339 · NIGMS · NORTHWESTERN UNIVERSITY · PI SMITH, AARON T · 2013 to 2015
$159k
NHLBI NIH HHS T32 HL120822NHLBI NIH HHS T32HL120822NIBIB NIH HHS P30 EB009998NIDDK NIH HHS DK068139NIDDK NIH HHS R01 DK068139NIGMS NIH HHS F32 GM105339NIGMS NIH HHS F32GM105339NIGMS NIH HHS GM58518NIGMS NIH HHS R01 GM058518
6 · The paper itself

Abstract

The P1B-ATPases, which couple cation transport across membranes to ATP hydrolysis, are central to metal homeostasis in all organisms. An important feature of P1B-ATPases is the presence of soluble metal binding domains (MBDs) that regulate transport activity. Only one type of MBD has been characterized extensively, but bioinformatics analyses indicate that a diversity of MBDs may exist in nature. Here we report the biochemical, structural and functional characterization of a new MBD from the Cupriavidus metallidurans P1B-4-ATPase CzcP (CzcP MBD). The CzcP MBD binds two Cd(2+), Co(2+) or Zn(2+) ions in distinct and unique sites and adopts an unexpected fold consisting of two fused ferredoxin-like domains. Both in vitro and in vivo activity assays using full-length CzcP, truncated CzcP and several variants indicate a regulatory role for the MBD and distinct functions for the two metal binding sites. Taken together, these findings elucidate a previously unknown MBD and suggest new regulatory mechanisms for metal transport by P1B-ATPases.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsBinding SitesCadmiumCation Transport ProteinsCobaltCupriavidusEscherichia coliFerredoxinsGene ExpressionKineticsMolecular Dynamics SimulationOpen Reading FramesProtein BindingProtein FoldingProtein Structure, TertiaryAdenosine TriphosphatasesBacterial ProteinsCadmiumCation Transport ProteinsCobaltFerredoxinsRecombinant ProteinsZinc

Identifiers

PMID26192600
PMCPMC4543396

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.