Evidence map›Paper›PMID 26191621›Full record

ArticleVirus research2015

Molecular investigation of a full-length genome of a Q1-like IBV strain isolated in Italy in 2013.

Giovanni Franzo, Valeria Listorti, Clive J Naylor, Caterina Lupini, Andrea Laconi, Viviana Felice, Michele Drigo, Elena Catelli, Mattia Cecchinato

Open access · greenAbstract read
In one paragraph

Article in Virus research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

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  16. Whole-genome characterization of Uruguayan strains of avian infectious bronchitis virus reveals extensive recombination between the two major South American lineages.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Giovanni FranzoDepartment of Animal Medicine, Production and Health, University of Padua, Viale dell'università, 16, 35020, Legnaro (PD), Italy. Electronic address: giovanni.franzo@unipd.it.
Valeria ListortiDepartment of Veterinary Medical Sciences, University of Bologna, Via Tolara di Sopra, 50, 40064, Ozzano Emilia (BO), Italy.
Clive J NaylorDepartment of Infection Biology, University of Liverpool, Leahurst Campus, Neston, Cheshire CH64 7TE, United Kingdom.
Caterina LupiniDepartment of Veterinary Medical Sciences, University of Bologna, Via Tolara di Sopra, 50, 40064, Ozzano Emilia (BO), Italy.
Andrea LaconiDepartment of Veterinary Medical Sciences, University of Bologna, Via Tolara di Sopra, 50, 40064, Ozzano Emilia (BO), Italy.
Viviana FeliceDepartment of Veterinary Medical Sciences, University of Bologna, Via Tolara di Sopra, 50, 40064, Ozzano Emilia (BO), Italy.
Michele DrigoDepartment of Animal Medicine, Production and Health, University of Padua, Viale dell'università, 16, 35020, Legnaro (PD), Italy.
Elena CatelliDepartment of Veterinary Medical Sciences, University of Bologna, Via Tolara di Sopra, 50, 40064, Ozzano Emilia (BO), Italy.
Mattia CecchinatoDepartment of Animal Medicine, Production and Health, University of Padua, Viale dell'università, 16, 35020, Legnaro (PD), Italy.
University of Bologna · ITUniversity of Padua · ITUniversity of Liverpool · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since 1996 a new Infectious Bronchitis virus (IBV) genotype, referred to as Q1, circulated in China and was reported for the first time in Italy in 2011, associated with an increase of mortality, kidney lesions and proventriculitis. During northern Italian outbreak of respiratory disease in a broiler flock in 2013, an IBV strain was detected by RT-PCR and characterized as Q1-like based on partial S1 sequence. The virus was isolated and named γCoV/Ck/Italy/I2022/13. All coding regions of the isolate were sequenced and compared with 130 complete genome sequences of IBV and TCoV, downloaded from ViPR. This showed the highest identity with a Chinese strain CK/CH/LDL/97I (p-distance=0.044). To identify potential recombination events a complete genome SimPlot analysis was carried out which revealed the presence of possible multiple recombination events, but the minor parent strains remained unknown. A phylogenetic analysis of the complete S1 gene was performed using all complete S1 sequences available on ViPR and showed the isolate clustered with an Q1-like strain isolated in Italy in 2011 (p-distance=0.004) and a group of Chinese Q1-like strains isolated from the mid 90's (p-distance equal or higher than 0.001). It could be hypothesized that the isolate descended from the Italian 2011 Q1-like strain or was the result of a separate introduction from China through commercial trade or migratory birds; but the data currently available does not distinguish between these possibilities.

Indexed as

Genome, ViralSequence Analysis, DNAAnimalsChickensCluster AnalysisCoronavirus InfectionsInfectious bronchitis virusItalyMolecular Sequence DataPhylogenyPoultry DiseasesRNA, ViralSequence HomologyRNA, ViralComplete genomeGenotypeIBVPhylogenesisRecombination

Identifiers

PMID26191621
PMCPMC7114532
OpenAlexW888324903

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.