Evidence map›Paper›PMID 26191463›Full record

ArticleApplications in plant sciences2015

A complementation assay for in vivo protein structure/function analysis in Physcomitrella patens (Funariaceae).

Tess R Scavuzzo-Duggan, Arielle M Chaves, Alison W Roberts

Open access · goldAbstract read
In one paragraph

Article in Applications in plant sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Tess R Scavuzzo-DugganDepartment of Biological Sciences, University of Rhode Island, 120 Flagg Road, Kingston, Rhode Island 02881 USA.
Arielle M ChavesDepartment of Biological Sciences, University of Rhode Island, 120 Flagg Road, Kingston, Rhode Island 02881 USA.
Alison W RobertsDepartment of Biological Sciences, University of Rhode Island, 120 Flagg Road, Kingston, Rhode Island 02881 USA.
University of Rhode Island · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

premise of the studyA method for rapid in vivo functional analysis of engineered proteins was developed using Physcomitrella patens. METHODS AND

resultsA complementation assay was designed for testing structure/function relationships in cellulose synthase (CESA) proteins. The components of the assay include (1) construction of test vectors that drive expression of epitope-tagged PpCESA5 carrying engineered mutations, (2) transformation of a ppcesa5 knockout line that fails to produce gametophores with test and control vectors, (3) scoring the stable transformants for gametophore production, (4) statistical analysis comparing complementation rates for test vectors to positive and negative control vectors, and (5) analysis of transgenic protein expression by Western blotting. The assay distinguished mutations that generate fully functional, nonfunctional, and partially functional proteins.

conclusionsCompared with existing methods for in vivo testing of protein function, this complementation assay provides a rapid method for investigating protein structure/function relationships in plants.

Indexed as

cellulose synthasecomplementation assaygametophore developmentPhyscomitrella patensprotein structure/function relationships

Identifiers

PMID26191463
PMCPMC4504723
OpenAlexW1043490080

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.