Evidence map›Paper›PMID 26189575›Full record

ArticleBiochimica et biophysica acta2015

Engineering an analog-sensitive CDK12 cell line using CRISPR/Cas.

Bartlomiej Bartkowiak, Christopher Yan, Arno L Greenleaf

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 46 citations in OpenAlex.

  1. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. bioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. Article
  9. Targeting transcription cycles in cancer.Nature reviews. Cancer · 2022
    Review
  10. StableFrontiers in oncology · 2022
    Article
  11. Review
  12. CDK9 keeps RNA polymerase II on track.Cellular and molecular life sciences : CMLS · 2021
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Allele-Specific Inhibition of Histone Demethylases.Chembiochem : a European journal of chemical biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Bartlomiej BartkowiakDepartment of Biochemistry, Duke University Medical Center, United States.
Christopher YanDepartment of Biochemistry, Duke University Medical Center, United States.
Arno L GreenleafDepartment of Biochemistry, Duke University Medical Center, United States. Electronic address: arno@duke.edu.
Duke Medical Center · USDuke University Hospital · US

Funding

TRANSCRIPTASE KINASES FROM YEAST AND DROSOPHILAR01GM040505 · NIGMS · DUKE UNIVERSITY · PI GREENLEAF, ARNO L. · 1988 to 2014
$5.1M
NIGMS NIH HHS GM040505NIGMS NIH HHS R01 GM040505
6 · The paper itself

Abstract

The RNA Polymerase II C-terminal domain (CTD) kinase CDK12 has been implicated as a tumor suppressor and regulator of DNA damage response genes. Although much has been learned about CDK12 and its activity, due to the lack of a specific inhibitor and the complications posed by long term RNAi depletion, much is still unknown about the particulars of CDK12 function. Therefore gaining a better understanding of CDK12's roles at the molecular level will be challenging without the development of additional tools. In order to address these issues we have used the CRISPR/Cas gene engineering system to create a mammalian cell line in which the only functional copy of CDK12 is selectively inhibitable by a cell-permeable adenine analog (analog-sensitive CDK12). Inhibition of CDK12 results in a perturbation of the phosphorylation patterns on the CTD and an arrest in cellular proliferation. This cell line should serve as a powerful tool for future studies.

Indexed as

Base SequenceClustered Regularly Interspaced Short Palindromic RepeatsCyclin-Dependent KinasesDNAGene Knockdown TechniquesHeLa CellsHumansMolecular Sequence DataSequence Homology, Nucleic AcidCDK12 protein, humanCyclin-Dependent KinasesDNAAnalog-sensitiveCDK12Cell lineCRISPR/CasCTD phosphorylationUnintended splice site

Identifiers

PMID26189575
PMCPMC4556607
OpenAlexW903188105

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.