Evidence map›Paper›PMID 26188427›Full record

ArticleArchives of oral biology2015

Transcriptional analysis of human cranial compartments with different embryonic origins.

Negar Homayounfar, Sarah S Park, Zahra Afsharinejad, Theodor K Bammler, James W MacDonald, Federico M Farin, Brigham H Mecham, Michael L Cunningham

Open access · greenAbstract read
In one paragraph

Article in Archives of oral biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Expansion of the sagittal suture induces proliferation of skeletal stem cells and sustains endogenous calvarial bone regeneration.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Transcriptomic Signatures of Single-Suture Craniosynostosis Phenotypes.International journal of molecular sciences · 2023
    Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Negar HomayounfarCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, 1900 - 9th Avenue, Seattle, WA 98101, United States; Department of Oral Health Sciences, Dental School, University of Washington, United States; Department of Endodontics, Prosthodontics and Operative Dentistry, School of Dentistry, University of Maryland, Baltimore, United States. Electronic address: nehoma@u.washington.edu.
Sarah S ParkCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, 1900 - 9th Avenue, Seattle, WA 98101, United States.
Zahra AfsharinejadDepartment of Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, # 100, Seattle, WA 98105-6099, United States.
Theodor K BammlerDepartment of Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, # 100, Seattle, WA 98105-6099, United States.
James W MacDonaldDepartment of Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, # 100, Seattle, WA 98105-6099, United States.
Federico M FarinDepartment of Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, # 100, Seattle, WA 98105-6099, United States.
Brigham H MechamTrialomics, 1700 7th Avenue, # 116, Seattle, WA 98101, United States.
Michael L CunninghamCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, 1900 - 9th Avenue, Seattle, WA 98101, United States; Seattle Children's Craniofacial Center, 4800 Sand Point Way NE, Seattle, WA 98105, United States.
Seattle Children's Hospital · USTheodore Roosevelt High School · USUniversity of Washington · US

Funding

XENOBIOTIC BIOTRANSFORMATION AND DISPOSITIONP30ES007033 · NIEHS · UNIVERSITY OF WASHINGTON · PI Sheela Sathyanarayana · 1995 to 2026
$42.5M
Restoring FMRP Phenotypes Frpm Temporal Regional and Splice- Isoforms VarationsP30HD002274 · NICHD · UNIVERSITY OF WASHINGTON · PI GURALNICK, MICHAEL J · 1985 to 2013
$33.6M
Intellectual and Developmental Disabilities Research CenterU54HD083091 · NICHD · UNIVERSITY OF WASHINGTON · PI GURALNICK, MICHAEL J · 2014 to 2019
$7.9M
SINGLE SUTURE CRANIOSYNOSTOSIS: CANDIDATE GENE AND PATHWAY DISCOVERYR01DE018227 · NIDCR · UNIVERSITY OF WASHINGTON · PI CUNNINGHAM, MICHAEL L · 2008 to 2017
$5.6M
NICHD NIH HHS P30 HD002274NICHD NIH HHS P30 HD02274NICHD NIH HHS U54 HD083091NIDCR NIH HHS R01 DE018227NIDCR NIH HHS R01DE018227NIEHS NIH HHS P30 ES007033NIEHS NIH HHS P30ES007033
6 · The paper itself

Abstract

objectivePrevious investigations suggest that the embryonic origins of the calvarial tissues (neural crest or mesoderm) may account for the molecular mechanisms underlying sutural development. The aim of this study was to evaluate the differences in the gene expression of human cranial tissues and assess the presence of an expression signature reflecting their embryonic origins.

methodsUsing microarray technology, we investigated global gene expression of cells from the frontal and parietal bones and the metopic and sagittal intrasutural mesenchyme (ISM) of four human foetal calvaria. qRT-PCR of a selected group of genes was done to validate the microarray analysis. Paired comparison and correlation analyses were performed on microarray results.

resultsOf six paired comparisons, frontal and parietal compartments (distinct tissue types of calvaria, either bone or intrasutural mesenchyme) had the most different gene expression profiles despite being composed of the same tissue type (bone). Correlation analysis revealed two distinct gene expression profiles that separate frontal and metopic compartments from parietal and sagittal compartments. TFAP2A, TFAP2B, ICAM1, SULF1, TNC and FOXF2 were among differentially expressed genes.

conclusionTranscriptional profiles of two groups of tissues, frontal and metopic compartments vs. parietal and sagittal compartments, suggest differences in proliferation, differentiation and extracellular matrix production. Our data suggest that in the second trimester of human foetal development, a gene expression signature of neural crest origin still exists in frontal and metopic compartments while gene expression of parietal and sagittal compartments is more similar to mesoderm.

Indexed as

Gene Expression ProfilingGene Expression Regulation, DevelopmentalTranscription, GeneticCell DifferentiationFemaleFetusHumansMaleMicroarray AnalysisOsteogenesisReal-Time Polymerase Chain ReactionRNASkullRNACranial sutureDifferentiationExtracellular matrixMesodermNeural crestProliferation

Identifiers

PMID26188427
PMCPMC4750879
OpenAlexW1908786851

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.