Evidence map›Paper›PMID 26188203›Full record

ArticleJournal of experimental botany2015

Modulation of Arabidopsis and monocot root architecture by CLAVATA3/EMBRYO SURROUNDING REGION 26 peptide.

Nathan Czyzewicz, Chun-Lin Shi, Lam Dai Vu, Brigitte Van De Cotte, Charlie Hodgman, Melinka A Butenko, Ive De Smet

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
10.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 95 citations in OpenAlex.

  1. Review
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  3. Article
  4. Review
  5. Functional Analysis ofInternational journal of molecular sciences · 2024
    Article
  6. Review
  7. Small Peptides: Orchestrators of Plant Growth and Developmental Processes.International journal of molecular sciences · 2024
    Review
  8. Article
  9. Article
  10. Article
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  12. Article
  13. Forestry research · 2023
    Article
  14. Review
  15. Article
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  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Nathan CzyzewiczDivision of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Leicestershire LE12 5RD, UK.
Chun-Lin ShiDepartment of Biosciences, Section for Genetics and Evolutionary Biology, University of Oslo, N-0316 Oslo, Norway.
Lam Dai VuDepartment of Plant Systems Biology, VIB, B-9052 Ghent, Belgium Department of Plant Biotechnology and Genetics, Ghent University, B-9052 Ghent, Belgium Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium.
Brigitte Van De CotteDepartment of Plant Systems Biology, VIB, B-9052 Ghent, Belgium Department of Plant Biotechnology and Genetics, Ghent University, B-9052 Ghent, Belgium.
Charlie HodgmanCentre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Leicestershire LE12 5RD, UK.
Melinka A ButenkoDepartment of Biosciences, Section for Genetics and Evolutionary Biology, University of Oslo, N-0316 Oslo, Norway.
Ive De SmetDivision of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Leicestershire LE12 5RD, UK Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium Department of Plant Biotechnology and Genetics, Ghent University, B-9052 Ghent, Belgium Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Leicestershire LE12 5RD, UK ive.desmet@psb.vib-ugent.be.
Ghent University · BEUniversity of Nottingham · GBUniversity of Oslo · NOVIB-UGent Center for Plant Systems Biology · BE

Funding

Biotechnology and Biological Sciences Research Council BB/H022457/1
6 · The paper itself

Abstract

Plant roots are important for a wide range of processes, including nutrient and water uptake, anchoring and mechanical support, storage functions, and as the major interface with the soil environment. Several small signalling peptides and receptor kinases have been shown to affect primary root growth, but very little is known about their role in lateral root development. In this context, the CLE family, a group of small signalling peptides that has been shown to affect a wide range of developmental processes, were the focus of this study. Here, the expression pattern during lateral root initiation for several CLE family members is explored and to what extent CLE1, CLE4, CLE7, CLE26, and CLE27, which show specific expression patterns in the root, are involved in regulating root architecture in Arabidopsis thaliana is assessed. Using chemically synthesized peptide variants, it was found that CLE26 plays an important role in regulating A. thaliana root architecture and interacts with auxin signalling. In addition, through alanine scanning and in silico structural modelling, key residues in the CLE26 peptide sequence that affect its activity are pinpointed. Finally, some interesting similarities and differences regarding the role of CLE26 in regulating monocot root architecture are presented.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceArabidopsisArabidopsis ProteinsBrachypodiumPhylogenyPlant RootsTriticumArabidopsis ProteinsCLE26 protein, ArabidopsisArabidopsis thalianaauxinBrachypodium distachyonCLE26rootwheat.

Identifiers

PMID26188203
PMCPMC4526925
OpenAlexW2112000301

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.