Evidence map›Paper›PMID 26188050›Full record

ArticleJournal of biochemistry2016

PqqE from Methylobacterium extorquens AM1: a radical S-adenosyl-l-methionine enzyme with an unusual tolerance to oxygen.

Natsaran Saichana, Katsuyuki Tanizawa, Jiří Pechoušek, Petr Novák, Toshiharu Yakushi, Hirohide Toyama, Jitka Frébortová

Open access · greenAbstract read
In one paragraph

Article in Journal of biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Natsaran SaichanaDepartment of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research;
Katsuyuki TanizawaDepartment of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research;
Jiří PechoušekRegional Centre of Advanced Technologies and Materials, Faculty of Science, Palacký University, 783 71 Olomouc, Czech Republic;
Petr NovákRegional Centre of Advanced Technologies and Materials, Faculty of Science, Palacký University, 783 71 Olomouc, Czech Republic;
Toshiharu YakushiDepartment of Biological Chemistry, Faculty of Agriculture, Yamaguchi University, Yamaguchi 753-8515; and.
Hirohide ToyamaDepartment of Bioscience and Biotechnology, University of the Ryukyus, Okinawa 903-0213, Japan.
Jitka FrébortováDepartment of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research; jitka.frebortova@upol.cz.
Centre of the Region Haná for Biotechnical and Agricultural Research · CZRegional Centre of Advanced Technologies and Materials · CZUniversity of the Ryukyus · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methylobacterium extorquens AM1 is an aerobic facultative methylotroph known to secrete pyrroloquinoline quinone (PQQ), a cofactor of a number of bacterial dehydrogenases, into the culture medium. To elucidate the molecular mechanism of PQQ biosynthesis, we are focusing on PqqE which is believed to be the enzyme catalysing the first reaction of the pathway. PqqE belongs to the radical S-adenosyl-l-methionine (SAM) superfamily, in which most, if not all, enzymes are very sensitive to dissolved oxygen and rapidly inactivated under aerobic conditions. We here report that PqqE from M. extorquens AM1 is markedly oxygen-tolerant; it was efficiently expressed in Escherichia coli cells grown aerobically and affinity-purified to near homogeneity. The purified and reconstituted PqqE contained multiple (likely three) iron-sulphur clusters and showed the reductive SAM cleavage activity that was ascribed to the consensus [4Fe-4S](2+) cluster bound at the N-terminus region. Mössbauer spectrometric analyses of the as-purified and reconstituted enzymes revealed the presence of [4Fe-4S](2+) and [2Fe-2S](2+) clusters as the major forms with the former being predominant in the reconstituted enzyme. PqqE from M.extorquens AM1 may serve as a convenient tool for studying the molecular mechanism of PQQ biosynthesis, avoiding the necessity of establishing strictly anaerobic conditions.

Indexed as

Amino Acid SequenceBacterial ProteinsEndopeptidasesMethylobacterium extorquensMolecular Sequence DataOxygenPQQ CofactorS-AdenosylmethionineSequence Homology, Amino AcidSpectroscopy, MossbauerBacterial ProteinsEndopeptidasesOxygenPQQ CofactorPqqE protein, Methylobacterium extorquensS-AdenosylmethionineMethylobacterium extorquens AM1PQQPqqEradical SAM enzyme

Identifiers

PMID26188050
PMCPMC4882640
OpenAlexW1854291782

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.