Evidence map›Paper›PMID 26187957›Full record

ArticleApplied and environmental microbiology2015

Identification of Bradyrhizobium elkanii Genes Involved in Incompatibility with Soybean Plants Carrying the Rj4 Allele.

Omar M Faruque, Hiroki Miwa, Michiko Yasuda, Yoshiharu Fujii, Takakazu Kaneko, Shusei Sato, Shin Okazaki

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
10.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  8. Legumes Regulate Symbiosis with Rhizobia via Their Innate Immune System.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Omar M FaruqueGraduate School of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Hiroki MiwaGraduate School of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Michiko YasudaGraduate School of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Yoshiharu FujiiGraduate School of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Takakazu KanekoFaculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan.
Shusei SatoGraduate School of Life Sciences, Tohoku University, Sendai, Japan.
Shin OkazakiGraduate School of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan sokazaki@cc.tuat.ac.jp.ORCID http://orcid.org/0000-0002-6406-720X
Tokyo University of Agriculture and Technology · JPKyoto Sangyo University · JPTohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Symbioses between leguminous plants and soil bacteria known as rhizobia are of great importance to agricultural production and nitrogen cycling. While these mutualistic symbioses can involve a wide range of rhizobia, some legumes exhibit incompatibility with specific strains, resulting in ineffective nodulation. The formation of nodules in soybean plants (Glycine max) is controlled by several host genes, which are referred to as Rj genes. The soybean cultivar BARC2 carries the Rj4 gene, which restricts nodulation by specific strains, including Bradyrhizobium elkanii USDA61. Here we employed transposon mutagenesis to identify the genetic locus in USDA61 that determines incompatibility with soybean varieties carrying the Rj4 allele. Introduction of the Tn5 transposon into USDA61 resulted in the formation of nitrogen fixation nodules on the roots of soybean cultivar BARC2 (Rj4 Rj4). Sequencing analysis of the sequence flanking the Tn5 insertion revealed that six genes encoding a putative histidine kinase, transcriptional regulator, DNA-binding transcriptional activator, helix-turn-helix-type transcriptional regulator, phage shock protein, and cysteine protease were disrupted. The cysteine protease mutant had a high degree of similarity with the type 3 effector protein XopD of Xanthomonas campestris. Our findings shed light on the diverse and complicated mechanisms that underlie these highly host-specific interactions and indicate the involvement of a type 3 effector in Rj4 nodulation restriction, suggesting that Rj4 incompatibility is partly mediated by effector-triggered immunity.

Indexed as

AllelesBacterial ProteinsBradyrhizobiumGene Expression Regulation, BacterialGlycine maxMolecular Sequence DataPlant ProteinsPlant RootsSymbiosisBacterial ProteinsPlant Proteins

Identifiers

PMID26187957
PMCPMC4561682
OpenAlexW2135059437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.