Evidence map›Paper›PMID 26187125›Full record

ArticleWorld journal of microbiology & biotechnology2015

Rapid and qualitative fluorescence-based method for the assessment of PHA production in marine bacteria during batch culture.

Anne Elain, Magali Le Fellic, Yves-Marie Corre, Adélaïde Le Grand, Véronique Le Tilly, Jean-Luc Audic, Stéphane Bruzaud

Abstract read
PubMed Publisher
In one paragraph

Article in World journal of microbiology & biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Genome sequence of the marine alphaproteobacteriumMicrobiology resource announcements · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. PHA Production and PHA Synthases of the Halophilic BacteriumBioengineering (Basel, Switzerland) · 2020
    Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Anne ElainLaboratoire d'Ingénierie des Matériaux de Bretagne (LIMATB), Université de Bretagne-Sud, Rue de Saint Maudé, 56321, Lorient Cedex, France. anne.elain@univ-ubs.fr.
Magali Le FellicLaboratoire d'Ingénierie des Matériaux de Bretagne (LIMATB), Université de Bretagne-Sud, Rue de Saint Maudé, 56321, Lorient Cedex, France.
Yves-Marie CorreLaboratoire d'Ingénierie des Matériaux de Bretagne (LIMATB), Université de Bretagne-Sud, Rue de Saint Maudé, 56321, Lorient Cedex, France.
Adélaïde Le GrandLaboratoire d'Ingénierie des Matériaux de Bretagne (LIMATB), Université de Bretagne-Sud, Rue de Saint Maudé, 56321, Lorient Cedex, France.
Véronique Le TillyLaboratoire d'Ingénierie des Matériaux de Bretagne (LIMATB), Université de Bretagne-Sud, Rue de Saint Maudé, 56321, Lorient Cedex, France.
Jean-Luc AudicUMR CNRS, Institut des Sciences Chimiques de Rennes, Université Rennes 1, 263 Avenue du Général Leclerc, CS74205, Case 1011, 35042, Rennes Cedex, France.
Stéphane BruzaudLaboratoire d'Ingénierie des Matériaux de Bretagne (LIMATB), Université de Bretagne-Sud, Rue de Saint Maudé, 56321, Lorient Cedex, France.
Université de Bretagne Sud · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The expansion of polyhydroxyalkanoates (PHAs) into the biodegradable polymers market is mainly prevented by their production process which is still complicated with a low efficiency, resulting in relatively expensive products. In this study, we developed a method that used the lipophilic fluorescent probe Nile Red (1 mg l(-1) solution in DMSO) directly into the culture broth to stain the PHA inclusions inside bacterial cells followed by detection of the emitted fluorescence by both microscopic and spectrometric techniques. Epifluorescence microscopy provides a rapid tool to distinguish producing from non-producing bacterial species and the relative fluorescence intensity (FI) determined at the maximum of emission spectra in the wavelength region of 560-710 nm (λ(ex): 543 nm), allows a fast assessment of the cultural conditions that may enhance PHA production yield. During two-step cultivation in 500-ml flasks with glucose as the sole carbon source, the method aimed to select bacterial strains efficient for PHA synthesis among a marine collection. Subsequently, the NR assay was used to determine the C0/N0 ratio of the producing media that may improve the polymer yield as well as to follow the time course of fermentation. Characterization by GC-MS and DSC confirmed the production of the P(3-HB) homopolymer.

Indexed as

Industrial MicrobiologyAquatic OrganismsBacteriaBatch Cell Culture TechniquesCarbonFluorescent DyesFluorometryGas Chromatography-Mass SpectrometryGlucoseMicroscopy, FluorescenceOxazinesPolyhydroxyalkanoatesStaining and LabelingTime FactorsCarbonFluorescent DyesGlucosenile redOxazinesPolyhydroxyalkanoatesBatch cultureFluorescent probeMarine bacteriaNile Red dyePolyhydroxyalkanoates granules

Identifiers

PMID26187125
OpenAlexW1245438790

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.