Evidence map›Paper›PMID 26186555›Full record

ArticlePloS one2015

Two Mutations in the Caprine MTHFR 3'UTR Regulated by MicroRNAs Are Associated with Milk Production Traits.

Jinxing Hou, Xiaopeng An, Yuxuan Song, Teyang Gao, Yingnan Lei, Binyun Cao

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  4. Detection of 15-bp Deletion Mutation withinAnimals : an open access journal from MDPI · 2021
    Article
  5. Article
  6. Article
  7. Detection of a 4 bp Mutation in the 3'UTR Region of GoatAnimals : an open access journal from MDPI · 2020
    Article
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  15. The polymorphism in miR-25 attenuated the oncogenic function in gastric cancer.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jinxing HouCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, P.R. China.
Xiaopeng AnCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, P.R. China.
Yuxuan SongCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, P.R. China.
Teyang GaoCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, P.R. China.
Yingnan LeiCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, P.R. China.
Binyun CaoCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, P.R. China.
Northwest A&F University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

background5,10-Methylenetetrahydrofolate reductase (MTHFR) plays a central role in folate metabolism by irreversibly converting 5,10-methylenetetrahydrofolate to 5-methylenetetrahydrofolate, a predominant circulating form of folate. Folate is reportedly important for milk protein synthesis, and MTHFR may be a key regulatory point of folate metabolism for milk protein synthesis in mammary epithelial cells. Prior to this study, polymorphisms of the MTHFR gene were not associated with milk production traits from a breeding perspective. Single nucleotide polymorphisms (SNPs) at microRNA (miRNA) binding sites (miR-SNPs) can affect gene expression. This study aimed to identify the effects of miR-SNPs (g.2244A>G and g.2264A>G) in the caprine MTHFR 3' UTR on the milk production traits of dairy goats.

resultsGuanzhong dairy (GD, n = 325) goats were used to detect SNPs in the caprine MTHFR 3' UTR by DNA sequencing. Two novel SNPs (g.2244A>G and g.2264A>G) were identified in the said region. The homozygous haplotype A-G of the SNPs g.2244A>G and g.2264A>G was significantly associated with milk yield and milk protein levels in GD goats (P < 0.05). Functional assays indicated that the MTHFR 2244 A → G substitution could increase the binding activity of hsa-miR-1266 with the MTHFR 3' UTR. The MTHFR 2264 A → G substitution could decrease the binding activity of hsa-miR-616 with the MTHFR 3' UTR. In addition, we observed a significant increase in the MTHFR mRNA levels of homozygous haplotype A-G carriers relative to those of homozygous haplotype G-A carriers. These results indicated that both SNPs altered the MTHFR mRNA levels. These altered levels of MTHFR mRNA may account for the association of SNPs with milk production traits.

conclusionsThis study is the first to report that the g.2244A>G and g.2264A>G polymorphisms were associated with milk production traits in GD goats. Further investigations should explore the underlying miRNA-mediated mechanisms that are modified by the g.2244A>G and g.2264A>G SNPs. The current study evaluated these SNPs as potential genetic markers in goats, with potential applications in breeding programs.

Indexed as

3' Untranslated RegionsMilkMutationQuantitative Trait, HeritableAllelesAnimalsDNA Mutational AnalysisGenetic Association StudiesGenotypeGoatsHaplotypesMethylenetetrahydrofolate Reductase (NADPH2)MicroRNAsPolymorphism, Single NucleotideQuantitative Trait LociRNA Interference3' Untranslated RegionsMethylenetetrahydrofolate Reductase (NADPH2)MicroRNAs

Identifiers

PMID26186555
PMCPMC4505847
OpenAlexW1658578810

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.