Evidence map›Paper›PMID 26185097›Full record

ArticleGenome biology and evolution2015

Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity-Related Traits through Lateral Gene Transfer.

Matteo Chiara, Marta Caruso, Anna Maria D'Erchia, Caterina Manzari, Rosa Fraccalvieri, Elisa Goffredo, Laura Latorre, Angela Miccolupo, Iolanda Padalino, Gianfranco Santagada and 4 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 57 citations in OpenAlex.

  1. Proposal to validateMicrobiology spectrum · 2026
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  2. Avoidance of MAIT cells is an essential determinant ofProceedings of the National Academy of Sciences of the United States of America · 2026
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  6. International journal of systematic and evolutionary microbiology · 2025
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  9. Genetic Diversity ofMolecular genetics, microbiology and virology : Molekulyarnaya genetika, mikrobiologiya i virusologiya · 2023
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  10. Whole-genome sequencing ofFrontiers in microbiology · 2023
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  11. Article
  12. Isolation ofBiology · 2022
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  14. Article
  15. Review
  16. Article
  17. Infection and drug resistance · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Matteo ChiaraDipartimento di Bioscienze, Università degli Studi di Milano, Italy Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy.
Marta CarusoIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy.
Anna Maria D'ErchiaDipartimento di Bioscienze, Biotecnologie e Biofarmaceutica, Università degli Studi di Bari Aldo Moro, Italy Istituto di Biomembrane e Bioenergetica, Consiglio Nazionale delle Ricerche, Bari, Italy.
Caterina ManzariIstituto di Biomembrane e Bioenergetica, Consiglio Nazionale delle Ricerche, Bari, Italy.
Rosa FraccalvieriIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy.
Elisa GoffredoIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy.
Laura LatorreIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy.
Angela MiccolupoIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy.
Iolanda PadalinoIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy.
Gianfranco SantagadaIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy.
Doriano ChioccoIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy.
Graziano PesoleDipartimento di Bioscienze, Biotecnologie e Biofarmaceutica, Università degli Studi di Bari Aldo Moro, Italy Istituto di Biomembrane e Bioenergetica, Consiglio Nazionale delle Ricerche, Bari, Italy.
David S HornerDipartimento di Bioscienze, Università degli Studi di Milano, Italy david.horner@unimi.it parisi.izspb@gmail.com.
Antonio ParisiIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy david.horner@unimi.it parisi.izspb@gmail.com.
Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata · ITInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies · ITUniversity of Milan · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Historically, genome-wide and molecular characterization of the genus Listeria has concentrated on the important human pathogen Listeria monocytogenes and a small number of closely related species, together termed Listeria sensu strictu. More recently, a number of genome sequences for more basal, and nonpathogenic, members of the Listeria genus have become available, facilitating a wider perspective on the evolution of pathogenicity and genome level evolutionary dynamics within the entire genus (termed Listeria sensu lato). Here, we have sequenced the genomes of additional Listeria fleischmannii and Listeria newyorkensis isolates and explored the dynamics of genome evolution in Listeria sensu lato. Our analyses suggest that acquisition of genetic material through gene duplication and divergence as well as through lateral gene transfer (mostly from outside Listeria) is widespread throughout the genus. Novel genetic material is apparently subject to rapid turnover. Multiple lines of evidence point to significant differences in evolutionary dynamics between the most basal Listeria subclade and all other congeners, including both sensu strictu and other sensu lato isolates. Strikingly, these differences are likely attributable to stochastic, population-level processes and contribute to observed variation in genome size across the genus. Notably, our analyses indicate that the common ancestor of Listeria sensu lato lacked flagella, which were acquired by lateral gene transfer by a common ancestor of Listeria grayi and Listeria sensu strictu, whereas a recently functionally characterized pathogenicity island, responsible for the capacity to produce cobalamin and utilize ethanolamine/propane-2-diol, was acquired in an ancestor of Listeria sensu strictu.

Indexed as

Evolution, MolecularGene Transfer, HorizontalGenome, BacterialDNA, BacterialEthanolamineGenes, BacterialGenomicsItalyListeriaPhylogenyPropylene GlycolsRepetitive Sequences, Nucleic AcidRiboflavinDNA, BacterialEthanolaminePropylene GlycolsRiboflavincobalamincomparative genomicsethanolamine metabolismflagellagenome sequencinglateral gene transferListeriapropane-2-diol metabolism

Identifiers

PMID26185097
PMCPMC4558849
OpenAlexW2107468995

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.