Evidence map›Paper›PMID 26184940›Full record

ArticleGenome announcements2015

Complete Genome Sequence of a Phenanthrene Degrader, Mycobacterium sp. Strain EPa45 (NBRC 110737), Isolated from a Phenanthrene-Degrading Consortium.

Hiromi Kato, Natsumi Ogawa, Yoshiyuki Ohtsubo, Kenshiro Oshima, Atsushi Toyoda, Hiroshi Mori, Yuji Nagata, Ken Kurokawa, Masahira Hattori, Asao Fujiyama and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance.DNA research : an international journal for rapid publication of reports on genes and genomes · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hiromi KatoGraduate School of Life Sciences, Tohoku University, Sendai, Japan.
Natsumi OgawaGraduate School of Life Sciences, Tohoku University, Sendai, Japan.
Yoshiyuki OhtsuboGraduate School of Life Sciences, Tohoku University, Sendai, Japan.
Kenshiro OshimaDepartment of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan.
Atsushi ToyodaCenter for Information Biology, National Institute of Genetics, Mishima, Japan.
Hiroshi MoriDepartment of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Tokyo, Japan.
Yuji NagataGraduate School of Life Sciences, Tohoku University, Sendai, Japan.
Ken Kurokawa
Masahira HattoriDepartment of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan.
Asao Fujiyama
Masataka TsudaGraduate School of Life Sciences, Tohoku University, Sendai, Japan mtsuda@ige.tohoku.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A phenanthrene degrader, Mycobacterium sp. EPa45, was isolated from a phenanthrene-degrading consortium. Here, we report the complete genome sequence of EPa45, which has a 6.2-Mb single circular chromosome. We propose a phenanthrene degradation pathway in EPa45 based on the complete genome sequence.

Identifiers

PMID26184940
PMCPMC4505128

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.