Evidence map›Paper›PMID 26184188›Full record

ArticleInternational journal of molecular sciences2015

Identification of Rhopalosiphum Padi Virus 5' Untranslated Region Sequences Required for Cryptic Promoter Activity and Internal Ribosome Entry.

Ming-Kun Liu, Jie-Zue Lin, Tzyy-Rong Jinn, Hong-Lin Chan, Tzong-Yuan Wu

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ming-Kun LiuInstitute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 300, Taiwan. lmk33@hotmail.com.
Jie-Zue LinInstitute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 300, Taiwan. blackeye514@hotmail.com.
Tzyy-Rong JinnSchool of Chinese Medicine, China Medical University, Taichung 40402, Taiwan. jinn@mail.cmu.edu.tw.
Hong-Lin ChanInstitute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 300, Taiwan. hlchan@life.nthu.edu.tw.
Tzong-Yuan WuDepartment of Bioscience Technology, Chung Yuan Christian University, Chungli 320, Taiwan. tywu@cycu.edu.tw.
National Tsing Hua University · TWChina Medical University · TWChung Yuan Christian University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 579-nucleotide 5' untranslated region (5'UTR) of the Rhopalosiphum padi virus (RhPV) possesses a cross-kingdom internal ribosome entry site (IRES) activity that functions in insect, mammalian, and plant-derived in vitro translation systems, and six TAAG motifs within the DNA fragment encoding the RhPV 5'UTR were previously found to confer the RhPV 5'UTR with late promoter activity in baculovirus. In the present study, various truncated RhPV 5'UTR sequences were produced, and among them, a fragment of 110 bp ranging from nucleotides 309 to 418 was identified to be the shortest fragment responsible for the late promoter activity in baculovirus infected Sf21 cells. This 110 bp fragment contains a TAAG tandem repeat that retains more than 60% of the late promoter activity of the full length RhPV 5'UTR sequence. Further, IRES activity remained unchanged in all truncated RhPV 5'UTR constructs. Taken together, this novel 110 bp fragment having late promoter activity in baculovirus as well as IRES activity in mammalian cell, renders it a useful tool for the development of a "shuttle" bi-cistronic baculovirus gene expression and/or delivery vector.

Indexed as

5' Untranslated RegionsAnimalsBaculoviridaeCHO CellsCricetinaeCricetulusGenes, ViralGenetic VectorsPromoter Regions, GeneticRibosomesSf9 CellsSpodoptera5' Untranslated Regionsbaculoviruscryptic promoterdicistrovirusesIRESRhPV

Identifiers

PMID26184188
PMCPMC4519938
OpenAlexW1483241538

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.