Evidence map›Paper›PMID 26184183›Full record

ArticleInternational journal of molecular sciences2015

Crystal Structure of a Hidden Protein, YcaC, a Putative Cysteine Hydrolase from Pseudomonas aeruginosa, with and without an Acrylamide Adduct.

Morten K Grøftehauge, Daphne Truan, Adriana Vasil, Paul W Denny, Michael L Vasil, Ehmke Pohl

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Serendipitous high-resolution structure of Escherichia coli carbonic anhydrase 2.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Morten K GrøftehaugeSchool of Biological and Biomedical Sciences, Durham University, Durham DH1 3LE, UK. m.k.groftehauge@durham.ac.uk.
Daphne TruanSwiss Light Source, Paul Scherrer Institute, Villigen CH-5232, Switzerland. daphne.truan@a3.epfl.ch.
Adriana VasilDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, USA. adriana.vasil@ucdenver.edu.
Paul W DennySchool of Biological and Biomedical Sciences, Durham University, Durham DH1 3LE, UK. p.w.denny@durham.ac.uk.
Michael L VasilDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, USA. mike.vasil@ucdenver.edu.
Ehmke PohlSchool of Biological and Biomedical Sciences, Durham University, Durham DH1 3LE, UK. ehmke.pohl@durham.ac.uk.
Durham University · GBUniversity of Colorado Denver · USPaul Scherrer Institute · CH

Funding

Wellcome TrustWellcome Trust WT094759AIA
6 · The paper itself

Abstract

As part of the ongoing effort to functionally and structurally characterize virulence factors in the opportunistic pathogen Pseudomonas aeruginosa, we determined the crystal structure of YcaC co-purified with the target protein at resolutions of 2.34 and 2.56 Å without a priori knowledge of the protein identity or experimental phases. The three-dimensional structure of YcaC adopts a well-known cysteine hydrolase fold with the putative active site residues conserved. The active site cysteine is covalently bound to propionamide in one crystal form, whereas the second form contains an S-mercaptocysteine. The precise biological function of YcaC is unknown; however, related prokaryotic proteins have functions in antibacterial resistance, siderophore production and NADH biosynthesis. Here, we show that YcaC is exceptionally well conserved across both bacterial and fungal species despite being non-ubiquitous. This suggests that whilst YcaC may not be part of an integral pathway, the function could confer a significant evolutionary advantage to microbial life.

Indexed as

AcrylamideAmino Acid SequenceBacterial ProteinsCatalytic DomainCrystallography, X-RayHydrolasesMolecular Sequence DataProtein Structure, TertiaryPseudomonas aeruginosaRecombinant ProteinsSequence AlignmentAcrylamideBacterial ProteinsHydrolasesRecombinant Proteinsisochorismate familymicro-crystalsmolecular replacementprotein octamerX-ray crystallographyYcaC

Identifiers

PMID26184183
PMCPMC4519933
OpenAlexW1508897730

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.