Evidence map›Paper›PMID 26183158›Full record

ArticleScientific reports2015

Identification of ULK1 as a novel biomarker involved in miR-4487 and miR-595 regulation in neuroblastoma SH-SY5Y cell autophagy.

Yi Chen, Shuya Wang, Lan Zhang, Tao Xie, Sicheng Song, Jian Huang, Yonghui Zhang, Liang Ouyang, Bo Liu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  8. Review
  9. Article
  10. MicroRNA-93 Regulates Hypoxia-Induced Autophagy by Targeting ULK1.Oxidative medicine and cellular longevity · 2017
    Article
  11. Autophagy-Regulating microRNAs and Cancer.Frontiers in oncology · 2017
    Review
  12. Article
  13. Review
  14. Interleukin-22 promotes papillary thyroid cancer cell migration and invasion through microRNA-595/Sox17 axis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yi ChenDepartment of Gastrointestinal Surgery, State Key Laboratory of Biotherapy, Collaborative Innovation Center of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China.
Shuya Wang1] Department of Gastrointestinal Surgery, State Key Laboratory of Biotherapy, Collaborative Innovation Center of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China [2] Northwestern University, Feinberg School of Medicine, 303 East Chicago Avenue, Chicago, Illinois 60611, USA.
Lan Zhang1] Department of Gastrointestinal Surgery, State Key Laboratory of Biotherapy, Collaborative Innovation Center of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China [2] School of Traditional Chinese Materia Medica, Shenyang Pharmaceutical University, Shenyang, 110016, China.
Tao XieDepartment of Gastrointestinal Surgery, State Key Laboratory of Biotherapy, Collaborative Innovation Center of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China.
Sicheng SongDepartment of Gastrointestinal Surgery, State Key Laboratory of Biotherapy, Collaborative Innovation Center of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China.
Jian HuangSchool of Traditional Chinese Materia Medica, Shenyang Pharmaceutical University, Shenyang, 110016, China.
Yonghui Zhang1] Department of Gastrointestinal Surgery, State Key Laboratory of Biotherapy, Collaborative Innovation Center of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China [2] Collaborative Innovation Center for Biotherapy, Department of Pharmacology &Pharmaceutical Sciences, School of Medicine, Tsinghua University, Beijing 100084, China.
Liang OuyangDepartment of Gastrointestinal Surgery, State Key Laboratory of Biotherapy, Collaborative Innovation Center of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China.
Bo LiuDepartment of Gastrointestinal Surgery, State Key Laboratory of Biotherapy, Collaborative Innovation Center of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China.
State Key Laboratory of BiotherapyShenyang Pharmaceutical University · CNSichuan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autophagy, referring to an evolutionarily conserved, multi-step lysosomal degradation process, has been well-known to be initiated by Unc-51 like kinase 1 (ULK1) with some links to Parkinson's disease (PD). MicroRNAs (miRNAs), small and non-coding endogenous RNAs 22 ~ 24 nucleotides (nt) in length, have been demonstrated to play an essential role for modulating autophagy. Recently, the relationships between miRNAs and autophagy have been widely reported in PD; however, how microRNAs regulate autophagy still remains in its infancy. Thus, in this study, we computationally constructed the ULK1-regulated autophagic kinase subnetwork in PD and further identified ULK1 able to negatively regulate p70(S6K) in starvation-induced autophagy of neuroblastoma SH-SY5Y cells. Combination of in silico prediction and microarray analyses, we identified that miR-4487 and miR-595 could target ULK1 and experimentally verified they could negatively or positively regulate ULK1-mediated autophagy. In conclusion, these results may uncover the novel ULK1-p70(S6K) autophagic pathway, as well as miR-4487 and miR-595 as new ULK1 target miRNAs. Thus, these findings would provide a clue to explore ULK1 and its target miRNAs as potential biomarkers in the future PD therapy.

Indexed as

Gene Expression Regulation, NeoplasticAutophagyAutophagy-Related Protein-1 HomologBiomarkersCell Line, TumorCluster AnalysisGene Expression ProfilingGene Expression Regulation, EnzymologicGene Regulatory NetworksHumansIntracellular Signaling Peptides and ProteinsMicroRNAsModels, BiologicalNeuroblastomaNeurodegenerative DiseasesProtein Serine-Threonine KinasesAutophagy-Related Protein-1 HomologBiomarkersIntracellular Signaling Peptides and ProteinsmicroRNA595 microRNA, humanMicroRNAsMIRN4487 microRNA, humanProtein Serine-Threonine KinasesRibosomal Protein S6 Kinases, 70-kDaULK1 protein, human

Identifiers

PMID26183158
PMCPMC4505320
OpenAlexW2263051089

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.