Evidence map›Paper›PMID 26182417›Full record

ArticleNeuron2015

Single-Cell mRNA Profiling Reveals Cell-Type-Specific Expression of Neurexin Isoforms.

Marc V Fuccillo, Csaba Földy, Özgün Gökce, Patrick E Rothwell, Gordon L Sun, Robert C Malenka, Thomas C Südhof

Abstract read
In one paragraph

Article in Neuron, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed.

  1. Article
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  9. Cell-type-resolvedbioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Article
  12. Review
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  14. Review
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  16. Review
  17. Alpha-neurexins in health and disease.Frontiers in molecular neuroscience · 2025
    Review
  18. Article
  19. Article
  20. Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Marc V FuccilloDepartment of Molecular and Cellular Physiology, School of Medicine, Stanford University, Stanford, CA 94305, USA; Nancy Pritzker Laboratory, Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University, Stanford, CA 94305, USA. Electronic address: fuccillo@mail.med.upenn.edu.
Csaba FöldyDepartment of Molecular and Cellular Physiology, School of Medicine, Stanford University, Stanford, CA 94305, USA; Nancy Pritzker Laboratory, Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University, Stanford, CA 94305, USA.
Özgün GökceDepartment of Molecular and Cellular Physiology, School of Medicine, Stanford University, Stanford, CA 94305, USA.
Patrick E RothwellDepartment of Molecular and Cellular Physiology, School of Medicine, Stanford University, Stanford, CA 94305, USA; Nancy Pritzker Laboratory, Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University, Stanford, CA 94305, USA.
Gordon L SunNancy Pritzker Laboratory, Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University, Stanford, CA 94305, USA.
Robert C MalenkaNancy Pritzker Laboratory, Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University, Stanford, CA 94305, USA.
Thomas C SüdhofDepartment of Molecular and Cellular Physiology, School of Medicine, Stanford University, Stanford, CA 94305, USA; Howard Hughes Medical Institute, School of Medicine, Stanford University, Stanford, CA 94305, USA. Electronic address: tcs1@stanford.edu.

Funding

TRANSGENIC COREP01DA008227 · NIDA · YALE UNIVERSITY · PI NESTLER, ERIC J. · 1993 to 2018
$28.1M
Role of synaptotagmins and neurexin ligands in homeostatic synaptic plasticityP50MH086403 · NIMH · STANFORD UNIVERSITY · PI DEISSEROTH, KARL A. · 2009 to 2019
$18.4M
FUNCTION OF NEUREXINSR37MH052804 · NIMH · UT SOUTHWESTERN MEDICAL CENTER · PI SUDHOF, THOMAS C. · 2000 to 2019
$9.3M
Linking cocaine induced synaptic changes to the single neuron transcriptomeK99DA038112 · NIDA · STANFORD UNIVERSITY · PI GOKCE, OZGUN · 2014 to 2015
$281k
Circuit Control By EndocannabinoidsK99DA034029 · NIDA · STANFORD UNIVERSITY · PI FOLDY, CSABA · 2012 to 2013
$275k
Linking Synaptic and Cognitive Deficits in a Model of Neuropsychiatric DiseaseK99MH099243 · NIMH · STANFORD UNIVERSITY · PI FUCCILLO, MARC V · 2012 to 2013
$176k
Nucleus accumbens synaptic mechanisms of opiate reward and aversionK99DA037279 · NIDA · STANFORD UNIVERSITY · PI ROTHWELL, PATRICK · 2015 to 2015
$175k
NIDA NIH HHS K99 DA034029NIDA NIH HHS K99DA034029NIDA NIH HHS K99 DA037279NIDA NIH HHS K99DA037279NIDA NIH HHS K99 DA038112NIDA NIH HHS K99DA038112NIDA NIH HHS P01 DA008227NIMH NIH HHS K99 MH099243NIMH NIH HHS MH086403NIMH NIH HHS P50 MH086403NIMH NIH HHS R37 MH052804NIMH NIH HHS R37MH52804
6 · The paper itself

Abstract

Neurexins are considered central organizers of synapse architecture that are implicated in neuropsychiatric disorders. Expression of neurexins in hundreds of alternatively spliced isoforms suggested that individual neurons might exhibit a cell-type-specific neurexin expression pattern (a neurexin code). To test this hypothesis, we quantified the single-cell levels of neurexin isoforms and other trans-synaptic cell-adhesion molecules by microfluidics-based RT-PCR. We show that the neurexin repertoire displays pronounced cell-type specificity that is remarkably consistent within each type of neuron. Furthermore, we uncovered region-specific regulation of neurexin transcription and splice-site usage. Finally, we demonstrate that the transcriptional profiles of neurexins can be altered in an experience-dependent fashion by exposure to a drug of abuse. Our data provide evidence of cell-type-specific expression patterns of multiple neurexins at the single-cell level and suggest that expression of synaptic cell-adhesion molecules overlaps with other key features of cellular identity and diversity.

Indexed as

AnimalsAnimals, Genetically ModifiedBrainCholecystokininGreen Fluorescent ProteinsHEK293 CellsHumansIn Vitro TechniquesMice, Inbred C57BLNerve NetNeural Cell Adhesion MoleculesNeuronsParvalbuminsProtein IsoformsReceptors, Dopamine D2RNA, MessengerCholecystokininGreen Fluorescent ProteinsNeural Cell Adhesion MoleculesParvalbuminsProtein IsoformsReceptors, Dopamine D2RNA, Messenger

Identifiers

PMID26182417
PMCPMC4733560

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.