Evidence map›Paper›PMID 26182356›Full record

ArticleBioscience reports2015

Base-CP proteasome can serve as a platform for stepwise lid formation.

Zanlin Yu, Nurit Livnat-Levanon, Oded Kleifeld, Wissam Mansour, Mark A Nakasone, Carlos A Castaneda, Emma K Dixon, David Fushman, Noa Reis, Elah Pick and 1 more

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Plasticity in the structure and assembly of proteasomes.The Journal of biological chemistry · 2026
    Review
  3. Review
  4. Review
  5. Article
  6. Synthetic ubiquitinated proteins meet the proteasome: Distinct roles of ubiquitin in a chain.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
  8. Proteasome Structure and Assembly.Journal of molecular biology · 2017
    Review
  9. Article
  10. Tuning the proteasome to brighten the end of the journey.American journal of physiology. Cell physiology · 2016
    Review
  11. Article
  12. Mass Spectrometry: A Technique of Many Faces.Quarterly reviews of biophysics · 2016
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Zanlin YuDepartment of Biology, Technion-Israel Institute of Technology, 32000 Haifa, Israel.
Nurit Livnat-LevanonDepartment of Biology, Technion-Israel Institute of Technology, 32000 Haifa, Israel.
Oded KleifeldDepartment of Biochemistry & Molecular Biology, Monash University, Clayton, VIC 3800, Australia.
Wissam MansourDepartment of Biology, Technion-Israel Institute of Technology, 32000 Haifa, Israel.
Mark A NakasoneDepartment of Biology, Technion-Israel Institute of Technology, 32000 Haifa, Israel.
Carlos A CastanedaDepartment of Biology and Environment, University of Haifa at Oranim, Tivon 36006, Israel.
Emma K DixonDepartment of Biology and Environment, University of Haifa at Oranim, Tivon 36006, Israel.
David FushmanDepartment of Biology and Environment, University of Haifa at Oranim, Tivon 36006, Israel.
Noa ReisDepartment of Biology, Technion-Israel Institute of Technology, 32000 Haifa, Israel.
Elah PickDepartment of Chemistry and Biochemistry, Center for Biomolecular Structure and Organization, University of Maryland, College Park, MD 20742, U.S.A.
Michael H GlickmanDepartment of Biology, Technion-Israel Institute of Technology, 32000 Haifa, Israel glickman@tx.technion.ac.il.
Technion – Israel Institute of Technology · ILUniversity of Haifa · ILMonash University · AUOranim Academic College of Education · IL

Funding

Recognition of non-ubiquitin signals at the proteasomeR01GM095755 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI FUSHMAN, DAVID · 2011 to 2014
$1.4M
NIGMS NIH HHS GM095755
6 · The paper itself

Abstract

26S proteasome, a major regulatory protease in eukaryotes, consists of a 20S proteolytic core particle (CP) capped by a 19S regulatory particle (RP). The 19S RP is divisible into base and lid sub-complexes. Even within the lid, subunits have been demarcated into two modules: module 1 (Rpn5, Rpn6, Rpn8, Rpn9 and Rpn11), which interacts with both CP and base sub-complexes and module 2 (Rpn3, Rpn7, Rpn12 and Rpn15) that is attached mainly to module 1. We now show that suppression of RPN11 expression halted lid assembly yet enabled the base and 20S CP to pre-assemble and form a base-CP. A key role for Regulatory particle non-ATPase 11 (Rpn11) in bridging lid module 1 and module 2 subunits together is inferred from observing defective proteasomes in rpn11-m1, a mutant expressing a truncated form of Rpn11 and displaying mitochondrial phenotypes. An incomplete lid made up of five module 1 subunits attached to base-CP was identified in proteasomes isolated from this mutant. Re-introducing the C-terminal portion of Rpn11 enabled recruitment of missing module 2 subunits. In vitro, module 1 was reconstituted stepwise, initiated by Rpn11-Rpn8 heterodimerization. Upon recruitment of Rpn6, the module 1 intermediate was competent to lock into base-CP and reconstitute an incomplete 26S proteasome. Thus, base-CP can serve as a platform for gradual incorporation of lid, along a proteasome assembly pathway. Identification of proteasome intermediates and reconstitution of minimal functional units should clarify aspects of the inner workings of this machine and how multiple catalytic processes are synchronized within the 26S proteasome holoenzymes.

Indexed as

EndopeptidasesGene SilencingModels, MolecularMutationProteasome Endopeptidase ComplexProtein DomainsSaccharomyces cerevisiae ProteinsATP dependent 26S proteaseEndopeptidasesProteasome Endopeptidase ComplexRPN11 protein, S cerevisiaeRpn6 protein, S cerevisiaeRpn8 protein, S cerevisiaeRpn9 protein, S cerevisiaeSaccharomyces cerevisiae Proteins19S regulatory particle20S core particle26S proteasomebaselidMPNPCIrpn11-m1

Identifiers

PMID26182356
PMCPMC4438304
OpenAlexW2141955161

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.