Evidence map›Paper›PMID 26179072›Full record

ArticlePlant cell reports2015

Selection of reference genes for quantitative real-time PCR normalization in creeping bentgrass involved in four abiotic stresses.

Yu Chen, Baoyun Hu, Zhiqun Tan, Jun Liu, Zhimin Yang, Zhihua Li, Bingru Huang

Abstract read
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In one paragraph

Article in Plant cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 73 citations in OpenAlex.

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  16. Genes · 2020
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  19. Identification and validation of superior housekeeping gene(s) for qRT-PCR data normalization inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Yu ChenCollege of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095, China.
Baoyun HuCollege of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095, China.
Zhiqun TanCollege of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China.
Jun LiuCollege of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095, China.
Zhimin YangCollege of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095, China. nauyzm@njau.edu.cn.
Zhihua LiCollege of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095, China.
Bingru HuangDepartment of Plant Biology and Pathology, Rutgers University, New Brunswick, NJ, 08901, USA. huang@aesop.rutgers.edu.
Nanjing Agricultural University · CNRutgers, The State University of New Jersey · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageThis study identified stable reference genes for normalization of gene expression data in qRT-PCR analysis of leaf and root tissues in creeping bentgrass under four abiotic stresses. Examination of gene expression using quantitative real-time PCR (qRT-PCR) in plant responses to abiotic stresses can provide valuable information for stress-tolerance improvement. Selecting stable reference genes for qRT-PCR analysis is critically important. The objective of this study was to determine the stability of expression for eight candidate reference genes (ACT, EF1a, TUB, UPL7, GAPDH, PP2A, PEPKR1, and CACS) in two tissues (roots and leaves) of a perennial grass species under four abiotic stresses (salt, drought, cold, and heat) using four programs (GeNorm, NormFinder, BestKeeper, and RefFinder). The results showed that (1) the combinations of CACS and UPL7 or PP2A and ACT were stably expressed in salt-treated roots or leaves; (2) the combinations of GAPDH and CACS or PP2A and PEPKR1 were stable in roots and leaves under drought stress; (3) CACS and PP2A exhibited stable expression in cold-treated roots and the combination of EF1a and UPL7 was also stable in cold-treated leaves; and (4) CACS and PP2A were the two most stable reference genes in heat-stressed roots and UPL7 combined with GAPDH and PP2A was stably expressed in heat-stressed leaves. The qRT-PCR analysis of a target gene, AsSAP expression patterns in response to salinity and drought stress, confirmed the reliability of those selected and stable reference genes. Identification of stable reference genes in creeping bentgrass will improve assay accuracy for selecting stress-tolerance genes and identifying molecular mechanisms conferring stress tolerance in this species.

Indexed as

Gene Expression Regulation, PlantAgrostisDroughtsReal-Time Polymerase Chain ReactionStress, PhysiologicalAbiotic stressCreeping bentgrassqRT-PCRReference genes

Identifiers

PMID26179072
OpenAlexW876418865

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.