Evidence map›Paper›PMID 26178471›Full record

ArticleNature communications2015

D2HGDH regulates alpha-ketoglutarate levels and dioxygenase function by modulating IDH2.

An-Ping Lin, Saman Abbas, Sang-Woo Kim, Manoela Ortega, Hakim Bouamar, Yissela Escobedo, Prakash Varadarajan, Yuejuan Qin, Jessica Sudderth, Eduard Schulz and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 88 citations in OpenAlex.

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  19. Metabolic Reprogramming and Potential Therapeutic Targets in Lymphoma.International journal of molecular sciences · 2023
    Review
  20. Metabolic determinants of tumour initiation.Nature reviews. Endocrinology · 2023
    Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 2 countries.

An-Ping LinDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Saman AbbasDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Sang-Woo KimDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Manoela OrtegaDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Hakim BouamarDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Yissela EscobedoDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Prakash VaradarajanDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Yuejuan QinDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Jessica SudderthDepartment of Pediatrics, Children's Medical Center Research Institute, University of Texas Southwestern, Dallas, Texas 75390, USA.
Eduard SchulzDivision of Hematology, Medical University of Graz, A-8036 Graz, Austria.
Alexander DeutschDivision of Hematology, Medical University of Graz, A-8036 Graz, Austria.
Sumitra MohanInstitute of Human Genetics, Medical University of Graz, A-8036 Graz, Austria.
Peter UlzInstitute of Human Genetics, Medical University of Graz, A-8036 Graz, Austria.
Peter NeumeisterDivision of Hematology, Medical University of Graz, A-8036 Graz, Austria.
Dinesh Rakheja1] Department of Pediatrics, Children's Medical Center Research Institute, University of Texas Southwestern, Dallas, Texas 75390, USA [2] Department of Pathology and Pediatrics, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Xiaoli GaoDepartment of Biochemistry, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Andrew HinckDepartment of Biochemistry, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Susan T WeintraubDepartment of Biochemistry, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Ralph J DeBerardinisDepartment of Pediatrics, Children's Medical Center Research Institute, University of Texas Southwestern, Dallas, Texas 75390, USA.
Heinz SillDivision of Hematology, Medical University of Graz, A-8036 Graz, Austria.
Patricia L M Dahia1] Division of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA [2] Greehey Children's Cancer Research Institute, University of Texas Health Sciences Center at San Antonio, San Antonio, Texas 78229, USA [3] Cancer Therapy and Research Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Ricardo C T Aguiar1] Division of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA [2] Greehey Children's Cancer Research Institute, University of Texas Health Sciences Center at San Antonio, San Antonio, Texas 78229, USA [3] Cancer Therapy and Research Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA [4] South Texas Veterans Health Care System, Audie Murphy VA Hospital, San Antonio, Texas 78229, USA.
The University of Texas Health Science Center at San Antonio · USMedical University of Graz · ATChildren's Medical Center · USThe University of Texas Southwestern Medical Center · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Institute for Integration of Medicine & Science: A Partnership to Improve HealthUL1TR001120 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A, HARGREAVES, KENNETH M · 2013 to 2017
$16.5M
microRNA-155 and LymphomaR01CA138747 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI AGUIAR, RICARDO C · 2010 to 2014
$1.5M
Triple Quadrupole Mass Spectrometer for Metabolomics AnalysisS10RR031586 · NCRR · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI WEINTRAUB, SUSAN T · 2011 to 2011
$446k
NCATS NIH HHS UL1 TR001120NCI NIH HHS P30 CA054174NCI NIH HHS R01 CA138747NCI NIH HHS R01-CA138747NCRR NIH HHS 1S10RR031586-01NCRR NIH HHS S10 RR031586
6 · The paper itself

Abstract

Isocitrate dehydrogenases (IDH) convert isocitrate to alpha-ketoglutarate (α-KG). In cancer, mutant IDH1/2 reduces α-KG to D2-hydroxyglutarate (D2-HG) disrupting α-KG-dependent dioxygenases. However, the physiological relevance of controlling the interconversion of D2-HG into α-KG, mediated by D2-hydroxyglutarate dehydrogenase (D2HGDH), remains obscure. Here we show that wild-type D2HGDH elevates α-KG levels, influencing histone and DNA methylation, and HIF1α hydroxylation. Conversely, the D2HGDH mutants that we find in diffuse large B-cell lymphoma are enzymatically inert. D2-HG is a low-abundance metabolite, but we show that it can meaningfully elevate α-KG levels by positively modulating mitochondrial IDH activity and inducing IDH2 expression. Accordingly, genetic depletion of IDH2 abrogates D2HGDH effects, whereas ectopic IDH2 rescues D2HGDH-deficient cells. Our data link D2HGDH to cancer and describe an additional role for the enzyme: the regulation of IDH2 activity and α-KG-mediated epigenetic remodelling. These data further expose the intricacies of mitochondrial metabolism and inform on the pathogenesis of D2HGDH-deficient diseases.

Indexed as

Gene Expression Regulation, NeoplasticAlcohol OxidoreductasesBlotting, WesternCell Line, TumorDioxygenasesDNA MethylationEpigenesis, GeneticHEK293 CellsHistonesHumansHydroxylationHypoxia-Inducible Factor 1, alpha SubunitIsocitrate DehydrogenaseKetoglutaric AcidsLymphoma, Large B-Cell, DiffuseMethylationAlcohol OxidoreductasesD2HGDH protein, humanDioxygenasesHIF1A protein, humanHistonesHypoxia-Inducible Factor 1, alpha SubunitIDH2 protein, humanIsocitrate DehydrogenaseKetoglutaric Acids

Identifiers

PMID26178471
PMCPMC4515030
OpenAlexW2224154609

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.