Evidence map›Paper›PMID 26177955›Full record

ArticleProtein science : a publication of the Protein Society2015

Cofactor-induced reversible folding of Flavodoxin-4 from Lactobacillus acidophilus.

Samit Kumar Dutta, Pedro Serrano, Michael Geralt, Herbert L Axelrod, Qingping Xu, Scott A Lesley, Adam Godzik, Ashley M Deacon, Marc-André Elsliger, Ian A Wilson and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Samit Kumar DuttaJoint Center for Structural Genomics, La Jolla, California, 92037.
Pedro SerranoJoint Center for Structural Genomics, La Jolla, California, 92037.
Michael GeraltJoint Center for Structural Genomics, La Jolla, California, 92037.
Herbert L AxelrodJoint Center for Structural Genomics, La Jolla, California, 92037.
Qingping XuJoint Center for Structural Genomics, La Jolla, California, 92037.
Scott A LesleyJoint Center for Structural Genomics, La Jolla, California, 92037.
Adam GodzikJoint Center for Structural Genomics, La Jolla, California, 92037.
Ashley M DeaconJoint Center for Structural Genomics, La Jolla, California, 92037.
Marc-André ElsligerJoint Center for Structural Genomics, La Jolla, California, 92037.
Ian A WilsonJoint Center for Structural Genomics, La Jolla, California, 92037.
Kurt WüthrichJoint Center for Structural Genomics, La Jolla, California, 92037.
Joint Center for Structural Genomics · USScripps Research Institute · USSLAC National Accelerator Laboratory · USStanford Synchrotron Radiation Lightsource · USUniversity of California, San Diego · US

Funding

Structure Determination Core at SSRLU54GM094586 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI HODGSON, KEITH O · 2010 to 2014
$40.1M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
NIGMS NIH HHS P41GM103393NIGMS NIH HHS U54 GM094586
6 · The paper itself

Abstract

Flavodoxins in combination with the flavin mononucleotide (FMN) cofactor play important roles for electron transport in prokaryotes. Here, novel insights into the FMN-binding mechanism to flavodoxins-4 were obtained from the NMR structures of the apo-protein from Lactobacillus acidophilus (YP_193882.1) and comparison of its complex with FMN. Extensive reversible conformational changes were observed upon FMN binding and release. The NMR structure of the FMN complex is in agreement with the crystal structure (PDB ID: 3EDO) and exhibits the characteristic flavodoxin fold, with a central five-stranded parallel β-sheet and five α-helices forming an α/β-sandwich architecture. The structure differs from other flavoproteins in that helix α2 is oriented perpendicular to the β-sheet and covers the FMN-binding site. This helix reversibly unfolds upon removal of the FMN ligand, which represents a unique structural rearrangement among flavodoxins.

Indexed as

Amino Acid SequenceCrystallography, X-RayElectron TransportFlavin MononucleotideFlavodoxinLactobacillus acidophilusMagnetic Resonance SpectroscopyProtein BindingProtein FoldingFlavin MononucleotideFlavodoxincofactor bindingflavin mononucleotideprotein foldingprotein-ligand interaction

Identifiers

PMID26177955
PMCPMC4594659
OpenAlexW2164721039

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.