Evidence map›Paper›PMID 26177821›Full record

ArticleJournal of molecular evolution2015

Evolution of Eukaryotic DNA Polymerases via Interaction Between Cells and Large DNA Viruses.

Masaharu Takemura, Shin-ichi Yokobori, Hiroyuki Ogata

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of molecular evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

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  9. Giant Viruses Encode Actin-Related Proteins.Molecular biology and evolution · 2022
    Article
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  12. Diversification of giant and large eukaryotic dsDNA viruses predated the origin of modern eukaryotes.Proceedings of the National Academy of Sciences of the United States of America · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Masaharu TakemuraLaboratory of Biology, Department of Liberal Arts, Faculty of Science, Tokyo University of Science (RIKADAI), Kagurazaka 1-3, Shinjuku, Tokyo, 162-8601, Japan, takemura@rs.kagu.tus.ac.jp.
Shin-ichi Yokobori
Hiroyuki Ogata
Kyoto University Institute for Chemical ResearchTokyo University of Pharmacy and Life Sciences · JPTokyo University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

B-family DNA-directed DNA polymerases are DNA replication enzymes found in Eukaryota, Archaea, large DNA viruses, and in some, but not all, bacteria. Several polymerase domains are conserved among the B-family DNA polymerases from these organisms, suggesting that the B-family DNA polymerases evolved from a common ancestor. Eukaryotes retain at least three replicative B-family DNA polymerases, DNA polymerase α, δ, and ε, and one translesion B-family DNA polymerase, DNA polymerase ζ. Here, we present molecular evolutionary evidence that suggests DNA polymerase genes evolved through horizontal gene transfer between the viral and archaeal-eukaryotic lineages. Molecular phylogenetic analyses of the B-family DNA polymerases from nucleo-cytoplasmic large DNA viruses (NCLDVs), eukaryotes, and archaea suggest that different NCLDV lineages such as Poxviridae and Mimiviridae were involved in the evolution of different DNA polymerases (pol-α-, δ-, ε-, and ζ-like genes) in archaeal-eukaryotic cell lineages, putatively through horizontal gene transfer. These results support existing theories that link the evolution of NCLDVs and the origin of the eukaryotic nucleus.

Indexed as

Evolution, MolecularCell NucleusDNA-Directed DNA PolymeraseDNA VirusesEukaryotaEukaryotic CellsGene Transfer, HorizontalPhylogenySequence AlignmentDNA-Directed DNA Polymerase

Identifiers

PMID26177821
OpenAlexW1133072016

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.