Evidence map›Paper›PMID 26177502›Full record

ArticlePloS one2015

Heterogeneity among Homologs of Cutinase-Like Protein Cut5 in Mycobacteria.

Deepshikha Verma, Lahari Das, Vandana Gambhir, Kanak Lata Dikshit, Grish C Varshney

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Roles of Lipolytic enzymes inFrontiers in microbiology · 2024
    Review
  2. Expression of a Cutinase ofMicrobiology spectrum · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Deepshikha VermaCell biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh-, India.
Lahari DasCell biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh-, India.
Vandana GambhirCell biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh-, India.
Kanak Lata DikshitCell biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh-, India.
Grish C VarshneyCell biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh-, India.
Institute of Microbial Technology · IN

Funding

PHS HHS MOP-93573PHS HHS RGPIN/202432-2012
6 · The paper itself

Abstract

The study of genomic variability within various pathogenic and non-pathogenic strains of mycobacteria provides insight into their evolution and pathogenesis. The mycobacterial genome encodes seven cutinase-like proteins and each one of these exhibit distinct characteristics. We describe the presence of Cut5, a member of the cutinase family, in mycobacteria and the existence of a unique genomic arrangement in the cut5 gene of M. tuberculosis (Mtb) strains. A single nucleotide (T) insertion is observed in the cut5 gene, which is specific for Mtb strains. Using in silico analysis and RT-PCR, we demonstrate the transcription of Rv3724/cut5 as Rv3724a/cut5a and Rv3724b/cut5b in Mtb H37Rv and as full length cut5 in M. bovis. Cut5b protein of Mtb H37Rv (MtbCut5b) was found to be antigenically similar to its homologs in M. bovis and M. smegmatis, without any observed cross-reactivity with other Mtb cutinases. Also, the presence of Cut5b in Mtb and its homologs in M. bovis and M. smegmatis were confirmed by western blotting using antibodies raised against recombinant Cut5b. In Mtb H37Rv, Cut5b was found to be localized in the cell wall, cytosol and membrane fractions. We also report the vast prevalence of Cut5 homologs in pathogenic and non pathogenic species of mycobacteria. In silico analysis revealed that this protein has three possible organizations in mycobacteria. Also, a single nucleotide (T) insertion in Mtb strains and varied genomic arrangements within mycobacterial species make Rv3724/Cut5 a potential candidate that can be exploited as a biomarker in Mtb infection.

Indexed as

Sequence Homology, Amino AcidAnimalsBacterial ProteinsBase SequenceCarboxylic Ester HydrolasesComputer SimulationEvolution, MolecularFemaleGenes, BacterialMice, Inbred BALB CMolecular Sequence DataMycobacteriumMycobacterium bovisMycobacterium tuberculosisProtein TransportReal-Time Polymerase Chain ReactionBacterial ProteinsCarboxylic Ester Hydrolasescutinase

Identifiers

PMID26177502
PMCPMC4503659
OpenAlexW1432611956

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.