Evidence map›Paper›PMID 26176901›Full record

ArticlePlant signaling & behavior2015

In silico prediction of proteins related to xyloglucan fucosyltransferases in Solanaceae genomes.

Arnaud Lehner, Laurence Menu-Bouaouiche, Flavien Dardelle, François Le Mauff, Azeddine Driouich, Patrice Lerouge, Jean-Claude Mollet

Open access · bronzeAbstract read
In one paragraph

Article in Plant signaling & behavior, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Arnaud Lehnera Laboratoire de Glycobiologie et Matrice Extracellulaire Végétale EA4358 ; IRIB; VASI; Normandy University; University of Rouen ; Mont-Saint-Aignan cedex , France.
Laurence Menu-Bouaouiche
Flavien Dardelle
François Le Mauff
Azeddine Driouich
Patrice Lerouge
Jean-Claude Mollet
Laboratoire de Glycobiologie et Matrice Extracellulaire Végétale

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two independent studies have shown that the cell wall of pollen tubes from tobacco and tomato species contained fucosylated xyloglucan (XyG). These findings are intriguing as many reports have shown that XyG of somatic cells of these species is not fucosylated but instead is arabinosylated. In order to produce fucosylated XyG, plants must express a functional galactoside α-2-fucosyltransferase. Here, using a bioinformatics approach, we show that several candidate genes coding for XyG fucosyltransferases are present in the genome of coffee and several Solanaceae species including tomato, tobacco, potato, eggplant and pepper. BLAST and protein alignments with the 2 well-characterized XyG fucosyltransferases from Arabidopsis thaliana and Pisum sativum revealed that at least 6 proteins from different Solanaceae species and from coffee displayed the 3 conserved motifs required for XyG fucosyltransferase activity.

Indexed as

Genome, PlantAlgorithmsAmino Acid MotifsAmino Acid SequenceCoffeaComputer SimulationFucosyltransferasesMolecular Sequence DataPhylogenyPlant ProteinsProtein Structure, TertiarySequence AlignmentSolanaceaeFucosyltransferasesPlant Proteinsxyloglucan 2-fucosyltransferaseAA, amino acidAGP, arabinogalactan proteinsCapsicum annuumcell wallCoffea canephoracoffeeEggplantFUT, fucosyltransferaseNicotiana benthamianaNicotiana tabacumpepperpollenpotatoSolanum lycopersicumSolanum melongenaSolanum tuberosumtobaccotomatoXyG, xyloglucan.xyloglucanxyloglucan fucosyltransferase.

Identifiers

PMID26176901
PMCPMC4622612
OpenAlexW1909245344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.