Evidence map›Paper›PMID 26175902›Full record

ReviewIUCrJ2015

Native SAD is maturing.

John P Rose, Bi-Cheng Wang, Manfred S Weiss

Abstract readReview
In one paragraph

Review in IUCrJ, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Native SAD phasing at room temperature.Acta crystallographica. Section D, Structural biology · 2022
    Article
  7. Phosphorus and sulfur SAD phasing of the nucleic acid-bound DNA-binding domain of interferon regulatory factor 4.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  8. Crystallographic analysis and phasing of iron-assimilating protein 1 (FEA1) from Chlamydomonas reinhardtii.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  9. Current research in structural biology · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Towards the automation of in situ experimental phasing.Acta crystallographica. Section D, Structural biology · 2020
    Article
  14. Review
  15. High-throughput in situ experimental phasing.Acta crystallographica. Section D, Structural biology · 2020
    Article
  16. Protein X-ray Crystallography and Drug Discovery.Molecules (Basel, Switzerland) · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. Making routine native SAD a reality: lessons from beamline X06DA at the Swiss Light Source.Acta crystallographica. Section D, Structural biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

John P RoseDepartment of Biochemistry and Molecular Biology, University of Georgia , Athens, Georgia, USA.
Bi-Cheng WangDepartment of Biochemistry and Molecular Biology, University of Georgia , Athens, Georgia, USA.
Manfred S WeissHelmholtz-Zentrum Berlin für Materialien und Energie , Berlin, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Native SAD phasing uses the anomalous scattering signal of light atoms in the crystalline, native samples of macromolecules collected from single-wavelength X-ray diffraction experiments. These atoms include sodium, magnesium, phosphorus, sulfur, chlorine, potassium and calcium. Native SAD phasing is challenging and is critically dependent on the collection of accurate data. Over the past five years, advances in diffraction hardware, crystallographic software, data-collection methods and strategies, and the use of data statistics have been witnessed which allow 'highly accurate data' to be routinely collected. Today, native SAD sits on the verge of becoming a 'first-choice' method for both de novo and molecular-replacement structure determination. This article will focus on advances that have caught the attention of the community over the past five years. It will also highlight both de novo native SAD structures and recent structures that were key to methods development.

Indexed as

accurate data collectiondata multiplicitynative SADnew data-scaling techniquesnew instrumentsradiation damagesulfur SAD

Identifiers

PMID26175902
PMCPMC4491315

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.