Evidence map›Paper›PMID 26175618›Full record

ArticleBreeding science2015

Detection of QTLs for white-back and basal-white grains caused by high temperature during ripening period in japonica rice.

Takuya Wada, Katsunori Miyahara, Jun-Ya Sonoda, Tadashi Tsukaguchi, Masayuki Miyazaki, Masao Tsubone, Tsuyu Ando, Kaworu Ebana, Toshio Yamamoto, Norio Iwasawa and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Breeding science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

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  15. Thermo-responsive allele ofBreeding science · 2018
    Article
  16. Review
  17. Genetic dissection of grain traits in Yamadanishiki, an excellent sake-brewing rice cultivar.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 3 countries.

Takuya WadaFukuoka Agriculture and Forestry Research Center , 587 Yoshiki, Chikushino, Fukuoka 818-8549 , Japan.
Katsunori MiyaharaFukuoka Agriculture and Forestry Research Center , 587 Yoshiki, Chikushino, Fukuoka 818-8549 , Japan.
Jun-Ya SonodaKagoshima Prefectural Institute for Agricultural Development , 2200 Ohno Kinpou-chou, Minami-Satsuma, Kagoshima 899-3401 , Japan.
Tadashi TsukaguchiFaculty of Bioresources and Environment Science, Ishikawa Prefectural University , 1-308 Suematsu, Nonoichi, Ishikawa 921-8836 , Japan.
Masayuki MiyazakiFukuoka Agriculture and Forestry Research Center , 587 Yoshiki, Chikushino, Fukuoka 818-8549 , Japan.
Masao TsuboneFukuoka Agriculture and Forestry Research Center , 587 Yoshiki, Chikushino, Fukuoka 818-8549 , Japan.
Tsuyu AndoInstitute of the Society for Techno-Innovation of Agriculture, Forestry and Fisheries , 446-1 Ippaizuka, Kamiyokoba, Tsukuba, Ibaraki 305-0854 , Japan.
Kaworu EbanaNational Institute of Agrobiological Science , 2-1-1 Kannondai, Tsukuba, Ibaraki 305-8602 , Japan.
Toshio YamamotoNational Institute of Agrobiological Science , 2-1-1 Kannondai, Tsukuba, Ibaraki 305-8602 , Japan.
Norio IwasawaNARO Institute of Crop Science , 2-1-18 Kannondai, Tsukuba, Ibaraki 305-8518 , Japan.
Takayuki UmemotoNARO Institute of Crop Science , 2-1-18 Kannondai, Tsukuba, Ibaraki 305-8518 , Japan.
Motohiko KondoNARO Institute of Crop Science , 2-1-18 Kannondai, Tsukuba, Ibaraki 305-8518 , Japan.
Masahiro YanoNational Institute of Agrobiological Science , 2-1-1 Kannondai, Tsukuba, Ibaraki 305-8602 , Japan.
Institute of Agrobiological Sciences · JPFukuoka Prefectural University · JPInstitute of Crop Science · JPTokyo Metropolitan Agriculture and Forestry Research Center · JPAgrárközgazdasági Intézet · HUHokkaido Agricultural Research Center · JPIshikawa Prefectural University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is increasing evidence that global warming affects the development of rice. High temperatures during ripening increase the ratio of undesirable chalky grains followed by deteriorating grain appearance quality. In order to detect quantitative trait loci (QTLs) controlling the occurrence of white-back and basal-white chalky grains of brown rice, QTL analysis was performed using recombinant inbred lines derived from a cross between two strains, 'Tsukushiroman' (sensitive to heat stress) and 'Chikushi 52' (tolerant of heat stress). The F7 and F8 lines were exposed to heat stress during the ripening period in two locations, Fukuoka and Kagoshima, in Japan. QTLs for white-back grains and basal-white grains were detected on chromosomes 1, 3, and 8, and those for basal-white grains were detected on chromosomes 2, 3, and 12. QTLs on chromosome 8 for white-back grains were shared in the plants grown in both locations. Near-isogenic lines (NILs), which harbored a segment from 'Chikushi 52' on chromosome 8 with the genetic background of 'Tsukushiroman', showed relatively lower ratios of white-back grains than 'Tsukushiroman'. Therefore, insertion of the 'Chikushi 52' genomic region of the QTL on chromosome 8 can improve the quality of rice when it is grown under heat stress conditions.

Indexed as

basal-white grainQTLricetolerance to high temperaturewhite-back grain

Identifiers

PMID26175618
PMCPMC4482171
OpenAlexW1583621436

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.