Evidence map›Paper›PMID 26175617›Full record

ArticleBreeding science2015

S-genotype identification based on allele-specific PCR in Japanese pear.

Kenji Nashima, Shingo Terakami, Sogo Nishio, Miyuki Kunihisa, Chikako Nishitani, Toshihiro Saito, Toshiya Yamamoto

Abstract read
In one paragraph

Article in Breeding science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Rapid identification of apple (Plant biotechnology (Tokyo, Japan) · 2017
    Article
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kenji NashimaNARO Institute of Fruit Tree Science , 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605 , Japan.
Shingo TerakamiNARO Institute of Fruit Tree Science , 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605 , Japan.
Sogo NishioNARO Institute of Fruit Tree Science , 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605 , Japan.
Miyuki KunihisaNARO Institute of Fruit Tree Science , 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605 , Japan.
Chikako NishitaniNARO Institute of Fruit Tree Science , 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605 , Japan.
Toshihiro SaitoNARO Institute of Fruit Tree Science , 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605 , Japan.
Toshiya YamamotoNARO Institute of Fruit Tree Science , 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605 , Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gametophytic self-incompatibility in Japanese pear (Pyrus pyrifolia Nakai) is controlled by the single, multi-allelic S-locus. Information about the S-genotypes is important for breeding and the selection of pollen donors for fruit production. Rapid and reliable S-genotype identification system is necessary for efficient breeding of new cultivars in Japanese pear. We designed S allele-specific PCR primer pairs for ten previously reported S-RNase alleles (S (1)-S (9) and S (k)) as simple and reliable method. Specific nucleotide sequences were chosen to design the primers to amplify fragments of only the corresponding S alleles. The developed primer pairs were evaluated by using homozygous S-genotypes (S (1)/S (1)-S (9)/S (9) and S (4sm)/S (4sm)) and 14 major Japanese pear cultivars, and found that S allele-specific primer pairs can identify S-genotypes effectively. The S allele-specific primer pairs developed in this study will be useful for efficient S-genotyping and for marker-assisted selection in Japanese pear breeding programs.

Indexed as

Pyrus pyrifoliaself-incompatibilityS-genotypingS-RNase

Identifiers

PMID26175617
PMCPMC4482170

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.