Evidence map›Paper›PMID 26174796›Full record

ArticleScientific reports2015

Prostate-specific RNA aptamer: promising nucleic acid antibody-like cancer detection.

Karina Marangoni, Adriana F Neves, Rafael M Rocha, Paulo R Faria, Patrícia T Alves, Aline G Souza, Patrícia T Fujimura, Fabiana A A Santos, Thaise G Araújo, Laura S Ward and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Review
  3. Rho GTPase activating protein 21-mediated regulation of prostate cancer associated 3 gene in prostate cancer cell.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2024
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  6. Review
  7. Article
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  9. Article
  10. The long non-coding RNAOncotarget · 2019
    Article
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  12. Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Karina Marangoni1] Laboratory of Cancer Molecular Genetics, Faculty of Medical Sciences, State University of Campinas, SP, Brazil [2] Laboratory of Nanobiotechnology, Institute of Genetics and Biochemistry, Federal University of Uberlândia, MG, Brazil.
Adriana F NevesLaboratory of Molecular Biology, Institute of Biotechnology, Federal University of Goiás, Catalão/GO, Brazil.
Rafael M RochaAC Camargo Cancer Hospital, SP, Brazil.
Paulo R FariaLaboratory of Histology, Institute of Biomedical Sciences, Federal University of Uberlândia, MG, Brazil.
Patrícia T AlvesLaboratory of Nanobiotechnology, Institute of Genetics and Biochemistry, Federal University of Uberlândia, MG, Brazil.
Aline G SouzaLaboratory of Nanobiotechnology, Institute of Genetics and Biochemistry, Federal University of Uberlândia, MG, Brazil.
Patrícia T FujimuraLaboratory of Nanobiotechnology, Institute of Genetics and Biochemistry, Federal University of Uberlândia, MG, Brazil.
Fabiana A A SantosLaboratory of Nanobiotechnology, Institute of Genetics and Biochemistry, Federal University of Uberlândia, MG, Brazil.
Thaise G AraújoLaboratory of Nanobiotechnology, Institute of Genetics and Biochemistry, Federal University of Uberlândia, MG, Brazil.
Laura S WardLaboratory of Cancer Molecular Genetics, Faculty of Medical Sciences, State University of Campinas, SP, Brazil.
Luiz R Goulart1] Laboratory of Nanobiotechnology, Institute of Genetics and Biochemistry, Federal University of Uberlândia, MG, Brazil [2] University of California-Davis, Dept. of Medical Microbiology and Immunology, Davis/CA, USA.
Universidade Federal de Uberlândia · BRUniversidade Estadual de Campinas (UNICAMP) · BRAC Camargo Hospital · BRUniversidade Federal de Goiás · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We described the selection of a novel nucleic acid antibody-like prostate cancer (PCa) that specifically binds to the single-stranded DNA molecule from a 277-nt fragment that may have been partially paired and bound to the PCA3 RNA conformational structure. PCA3-277 aptamer ligands were obtained, and the best binding molecule, named CG3, was synthesized for validation. Aiming to prove its diagnostic utility, we used an apta-qPCR assay with CG3-aptamer conjugated to magnetic beads to capture PCA3 transcripts, which were amplified 97-fold and 7-fold higher than conventional qPCR in blood and tissue, respectively. Histopathologic analysis of 161 prostate biopsies arranged in a TMA and marked with biotin-labeled CG3-aptamer showed moderate staining in both cytoplasm and nucleus of PCa samples; in contrast, benign prostatic hyperplasia (BPH) samples presented strong nuclear staining (78% of the cases). No staining was observed in stromal cells. In addition, using an apta-qPCR, we demonstrated that CG3-aptamer specifically recognizes the conformational PCA3-277 molecule and at least three other transcript variants, indicating that long non-coding RNA (lncRNA) is processed after transcription. We suggest that CG3-aptamer may be a useful PCa diagnostic tool. In addition, this molecule may be used in drug design and drug delivery for PCa therapy.

Indexed as

Antibodies, AntinuclearAntigens, NeoplasmAptamers, NucleotideBase SequenceDNA, NeoplasmDNA, Single-StrandedHumansImmunohistochemistryIn Situ HybridizationMaleNucleic Acid ConformationProstateProstatic HyperplasiaProstatic NeoplasmsReal-Time Polymerase Chain ReactionRNAAntibodies, AntinuclearAntigens, NeoplasmAptamers, NucleotideDNA, NeoplasmDNA, Single-Strandedprostate cancer antigen 3, humanRNARNA, Long Noncoding

Identifiers

PMID26174796
PMCPMC4502603
OpenAlexW2261031661

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.