Evidence map›Paper›PMID 26174136›Full record

ArticleNature communications2015

Three missense variants of metabolic syndrome-related genes are associated with alpha-1 antitrypsin levels.

Kazuya Setoh, Chikashi Terao, Shigeo Muro, Takahisa Kawaguchi, Yasuharu Tabara, Meiko Takahashi, Takeo Nakayama, Shinji Kosugi, Akihiro Sekine, Ryo Yamada and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 45 citations in OpenAlex.

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  15. A decade in psychiatric GWAS research.Molecular psychiatry · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Kazuya SetohCenter for Genomic Medicine, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 53, Sakyo-ku, Kyoto 606-8507, Japan.
Chikashi TeraoCenter for Genomic Medicine, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 53, Sakyo-ku, Kyoto 606-8507, Japan.
Shigeo MuroDepartment of Respiratory Medicine, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 54, Sakyo-ku, Kyoto 606-8507, Japan.
Takahisa KawaguchiCenter for Genomic Medicine, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 53, Sakyo-ku, Kyoto 606-8507, Japan.
Yasuharu TabaraCenter for Genomic Medicine, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 53, Sakyo-ku, Kyoto 606-8507, Japan.
Meiko TakahashiCenter for Genomic Medicine, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 53, Sakyo-ku, Kyoto 606-8507, Japan.
Takeo NakayamaDepartment of Health Informatics, Kyoto University School of Public Health, Yoshidakonoemachi, Sakyo-ku, Kyoto 606-8501, Japan.
Shinji KosugiDepartment of Medical Ethics and Medical Genetics, Kyoto University School of Public Health, Yoshidakonoemachi, Sakyo-ku Kyoto, 606-8501, Japan.
Akihiro SekineEBM Research Center, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 54, Sakyo-ku, Kyoto 606-8507, Japan.
Ryo YamadaStatistical Genetics, Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 53, Sakyo-ku, Kyoto 606-8507, Japan.
Michiaki MishimaDepartment of Respiratory Medicine, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 54, Sakyo-ku, Kyoto 606-8507, Japan.
Fumihiko Matsuda1] Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 53, Sakyo-ku, Kyoto 606-8507, Japan. [2] Statistical Genetics, Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Shogoinkawaramachi 53, Sakyo-ku, Kyoto 606-8507, Japan.
Kyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alpha-1 antitrypsin (AAT) encoded by SERPINA1 is an acute-phase inflammation marker, and AAT deficiency (AATD) is known as one of the common genetic disorders in European populations. However, no genetic determinants to AAT levels apart from the SERPINA gene clusters have been identified to date. Here we perform a genome-wide association study of serum AAT levels followed by a two-staged replication study recruiting a total of 9,359 Japanese community-dwelling population. Three missense variants of metabolic syndrome-related genes, namely, rs671 in ALDH2, rs1169288 in HNF1A and rs1260326 in GCKR, significantly associate with AAT levels (P≤1.5 × 10(-12)). Previous reports have shown the functional relevance of ALDH2 and HNF1A to AAT. We observe a significant interaction of rs671 and alcohol consumption on AAT levels. We confirm the association between AAT and rs2896268 in SERPINA1, which is independent of known causative variants of AATD. These findings would support various AAT functions including metabolic processes.

Indexed as

Adaptor Proteins, Signal TransducingAdultAgedAlcohol DrinkingAldehyde DehydrogenaseAldehyde Dehydrogenase, Mitochondrialalpha 1-AntitrypsinAsian PeopleFemaleGene Expression ProfilingGenome-Wide Association StudyGenotypeHepatocyte Nuclear Factor 1-alphaHumansJapanMaleAdaptor Proteins, Signal TransducingAldehyde DehydrogenaseAldehyde Dehydrogenase, MitochondrialALDH2 protein, humanalpha 1-AntitrypsinGCKR protein, humanHepatocyte Nuclear Factor 1-alphaHNF1A protein, humanSERPINA1 protein, human

Identifiers

PMID26174136
PMCPMC4518310
OpenAlexW2261900357

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.