Evidence map›Paper›PMID 26174024›Full record

ArticleHeredity2015

High nucleotide diversity and limited linkage disequilibrium in Helicoverpa armigera facilitates the detection of a selective sweep.

S V Song, S Downes, T Parker, J G Oakeshott, C Robin

Abstract read
In one paragraph

Article in Heredity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

S V SongDepartment of Genetics, University of Melbourne and Bio21 Institute, Melbourne, Victoria, Australia.
S DownesAgriculture Flagship, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Narrabri, New South Wales, Australia.
T ParkerAgriculture Flagship, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Narrabri, New South Wales, Australia.
J G OakeshottLand and Water Flagship, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australian Capital Territory, Australia.
C RobinDepartment of Genetics, University of Melbourne and Bio21 Institute, Melbourne, Victoria, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Insecticides impose extreme selective pressures on populations of target pests and so insecticide resistance loci of these species may provide the footprints of 'selective sweeps'. To lay the foundation for future genome-wide scans for selective sweeps and inform genome-wide association study designs, we set out to characterize some of the baseline population genomic parameters of one of the most damaging insect pests in agriculture worldwide, Helicoverpa armigera. To this end, we surveyed nine Z-linked loci in three Australian H. armigera populations. We find that estimates of π are in the higher range among other insects and linkage disequilibrium decays over short distances. One of the surveyed loci, a cytochrome P450, shows an unusual haplotype configuration with a divergent allele at high frequency that led us to investigate the possibility of an adaptive introgression around this locus.

Indexed as

Genetics, PopulationGenetic VariationLinkage DisequilibriumSelection, GeneticAnimalsAustraliaCytochrome P-450 Enzyme SystemFemaleGenes, InsectGenetic LociHaplotypesMaleModels, GeneticMolecular Sequence DataMothsSequence Analysis, DNACytochrome P-450 Enzyme System

Identifiers

PMID26174024
PMCPMC4611241

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.