Evidence map›Paper›PMID 26173148›Full record

ArticlePloS one2015

MicroRNA Profiling of Neurons Generated Using Induced Pluripotent Stem Cells Derived from Patients with Schizophrenia and Schizoaffective Disorder, and 22q11.2 Del.

Dejian Zhao, Mingyan Lin, Jian Chen, Erika Pedrosa, Anastasia Hrabovsky, H Matthew Fourcade, Deyou Zheng, Herbert M Lachman

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed, 3 pooled it
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 3 syntheses or guidelines pooled it, 102 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Mental health dished up-the use of iPSC models in neuropsychiatric research.Journal of neural transmission (Vienna, Austria : 1996) · 2020
    Pooled it
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  15. Copy Number Variations in Neuropsychiatric Disorders.International journal of molecular sciences · 2023
    Review
  16. Review
  17. Review
  18. Role and Dysregulation of miRNA in Patients with Parkinson's Disease.International journal of molecular sciences · 2022
    Article
  19. Review
  20. Decoding microRNAs in autism spectrum disorder.Molecular therapy. Nucleic acids · 2022
    Review

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Dejian ZhaoDepartment of Neurology, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America.
Mingyan LinDepartment of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America.
Jian ChenDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America.
Erika PedrosaDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America.
Anastasia HrabovskyDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America.
H Matthew FourcadeDepartment of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America.
Deyou ZhengDepartment of Neurology, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America; Department of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America; Department of Neuroscience, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America.
Herbert M LachmanDepartment of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America; Department of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America; Department of Neuroscience, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America; Department of Medicine, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America.
Albert Einstein College of Medicine · US

Funding

Monoallelic expression in neurons derived from induced pluripotent stem cellsR01MH099427 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI LACHMAN, HERBERT M · 2013 to 2017
$2.1M
Analysis of Glutamatergic Neurons Derived from Patient-Specific iPS CellsR33MH087840 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LACHMAN, HERBERT M · 2010 to 2011
$814k
microRNA analysis of neurons generated from patient-specific iPSCsR21MH093869 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LACHMAN, HERBERT M · 2012 to 2013
$451k
Novel regulatory network involving non-coding role of an ASD candidate gene PTENR21MH099452 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI ZHENG, DEYOU · 2012 to 2013
$449k
Analysis of Glutamatergic Neurons Derived from Patient-Specific iPS CellsR21MH087840 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LACHMAN, HERBERT M · 2009 to 2009
$332k
NIMH NIH HHS MH087840NIMH NIH HHS MH093869NIMH NIH HHS MH099427NIMH NIH HHS MH099452NIMH NIH HHS R01 MH099427NIMH NIH HHS R21 MH087840NIMH NIH HHS R21 MH093869NIMH NIH HHS R21 MH099452NIMH NIH HHS R33 MH087840
6 · The paper itself

Abstract

We are using induced pluripotent stem cell (iPSC) technology to study neuropsychiatric disorders associated with 22q11.2 microdeletions (del), the most common known schizophrenia (SZ)-associated genetic factor. Several genes in the region have been implicated; a promising candidate is DGCR8, which codes for a protein involved in microRNA (miRNA) biogenesis. We carried out miRNA expression profiling (miRNA-seq) on neurons generated from iPSCs derived from controls and SZ patients with 22q11.2 del. Using thresholds of p<0.01 for nominal significance and 1.5-fold differences in expression, 45 differentially expressed miRNAs were detected (13 lower in SZ and 32 higher). Of these, 6 were significantly down-regulated in patients after correcting for genome wide significance (FDR<0.05), including 4 miRNAs that map to the 22q11.2 del region. In addition, a nominally significant increase in the expression of several miRNAs was found in the 22q11.2 neurons that were previously found to be differentially expressed in autopsy samples and peripheral blood in SZ and autism spectrum disorders (e.g., miR-34, miR-4449, miR-146b-3p, and miR-23a-5p). Pathway and function analysis of predicted mRNA targets of the differentially expressed miRNAs showed enrichment for genes involved in neurological disease and psychological disorders for both up and down regulated miRNAs. Our findings suggest that: i. neurons with 22q11.2 del recapitulate the miRNA expression patterns expected of 22q11.2 haploinsufficiency, ii. differentially expressed miRNAs previously identified using autopsy samples and peripheral cells, both of which have significant methodological problems, are indeed disrupted in neuropsychiatric disorders and likely have an underlying genetic basis.

Indexed as

Chromosome DeletionGene Expression ProfilingAdultChromosomes, Human, Pair 22FemaleGene Regulatory NetworksHumansInduced Pluripotent Stem CellsMaleMicroRNAsMiddle AgedNeuronsPsychotic DisordersSchizophreniaSequence Analysis, RNAMicroRNAs

Identifiers

PMID26173148
PMCPMC4501820
OpenAlexW1638444713

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.