Evidence map›Paper›PMID 26173127›Full record

ArticlePloS one2015

DNA Topoisomerases Are Required for Preinitiation Complex Assembly during GAL Gene Activation.

Morten Roedgaard, Jacob Fredsoe, Jakob Madsen Pedersen, Lotte Bjergbaek, Anni Hangaard Andersen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular models of bidirectional promoter regulation.Current opinion in structural biology · 2024
    Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Morten RoedgaardLaboratory of Genome Research, Department of Molecular Biology and Genetics, Aarhus University, C. F. Møllers Allé 3, DK-8000, Aarhus C, Denmark.
Jacob FredsoeLaboratory of Genome Research, Department of Molecular Biology and Genetics, Aarhus University, C. F. Møllers Allé 3, DK-8000, Aarhus C, Denmark.
Jakob Madsen PedersenLaboratory of Genome Research, Department of Molecular Biology and Genetics, Aarhus University, C. F. Møllers Allé 3, DK-8000, Aarhus C, Denmark.
Lotte BjergbaekLaboratory of Genome Research, Department of Molecular Biology and Genetics, Aarhus University, C. F. Møllers Allé 3, DK-8000, Aarhus C, Denmark.
Anni Hangaard AndersenLaboratory of Genome Research, Department of Molecular Biology and Genetics, Aarhus University, C. F. Møllers Allé 3, DK-8000, Aarhus C, Denmark.
Aarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To investigate the importance of topoisomerases for transcription of the galactose induced genes, we have studied the expression of GAL1, GAL2, GAL7 and GAL10 in Saccharomyces cerevisiae cells deficient for topoisomerases I and II. We find that topoisomerases are required for transcriptional activation of the GAL genes, but are dispensable for ongoing transcription, eliminating a role of the enzymes in transcriptional elongation. Furthermore, we demonstrate that promoter chromatin remodeling of the GAL genes is unaffected in the topoisomerase deficient strain. However, the cells fail to successfully recruit RNA polymerase II due to an inability of the TATA-binding protein (TBP) to bind to the TATA box in these promoters. We therefore argue that topoisomerases are required for accurate assembly of the preinitiation complex at the promoters of the GAL genes.

Indexed as

Genes, FungalChromatin Assembly and DisassemblyDNA TopoisomerasesGalactokinaseGalactoseMonosaccharide Transport ProteinsPromoter Regions, GeneticRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTrans-ActivatorsTranscriptional ActivationDNA TopoisomerasesGAL10 protein, S cerevisiaeGAL1 protein, S cerevisiaeGAL2 protein, S cerevisiaeGalactokinaseGalactoseMonosaccharide Transport ProteinsRNA Polymerase IISaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTrans-Activators

Identifiers

PMID26173127
PMCPMC4501763
OpenAlexW1623671065

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.