Evidence map›Paper›PMID 26172740›Full record

ArticlePhysical review. E, Statistical, nonlinear, and soft matter physics2015

Modeling oscillations and spiral waves in Dictyostelium populations.

Javad Noorbakhsh, David J Schwab, Allyson E Sgro, Thomas Gregor, Pankaj Mehta

Abstract read
In one paragraph

Article in Physical review. E, Statistical, nonlinear, and soft matter physics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  12. Collective cell migration ofCommunications biology · 2019
    Article
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  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Javad NoorbakhshPhysics Department, Boston University, Boston, Massachusetts, USA.
David J SchwabJoseph Henry Laboratories of Physics, Princeton University, Princeton, New Jersey, USA.
Allyson E SgroJoseph Henry Laboratories of Physics, Princeton University, Princeton, New Jersey, USA.
Thomas GregorJoseph Henry Laboratories of Physics, Princeton University, Princeton, New Jersey, USA.
Pankaj MehtaPhysics Department, Boston University, Boston, Massachusetts, USA.

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI THIBERGE, STEPHAN · 2004 to 2013
$30.6M
Controlling collective behavior in eukaryotic cell populationsR01GM098407 · NIGMS · PRINCETON UNIVERSITY · PI GREGOR, THOMAS · 2012 to 2015
$1.1M
A quantitative study of cell-to-cell communication in bacteriaK25GM086909 · NIGMS · PRINCETON UNIVERSITY · PI MEHTA, PANKAJ · 2008 to 2012
$644k
Excitability in Dictyostelium DevelopmentK25GM098875 · NIGMS · PRINCETON UNIVERSITY · PI SCHWAB, DAVID JASON · 2012 to 2016
$620k
Characterization of single-cell dynamics that lead to collective behaviorsF32GM103062 · NIGMS · PRINCETON UNIVERSITY · PI SGRO, ALLYSON E · 2013 to 2014
$102k
NIGMS NIH HHS F32 GM103062NIGMS NIH HHS K25 GM086909NIGMS NIH HHS K25GM086909NIGMS NIH HHS K25 GM098875NIGMS NIH HHS P50 GM071508NIGMS NIH HHS R01 GM098407
6 · The paper itself

Abstract

Unicellular organisms exhibit elaborate collective behaviors in response to environmental cues. These behaviors are controlled by complex biochemical networks within individual cells and coordinated through cell-to-cell communication. Describing these behaviors requires new mathematical models that can bridge scales-from biochemical networks within individual cells to spatially structured cellular populations. Here we present a family of "multiscale" models for the emergence of spiral waves in the social amoeba Dictyostelium discoideum. Our models exploit new experimental advances that allow for the direct measurement and manipulation of the small signaling molecule cyclic adenosine monophosphate (cAMP) used by Dictyostelium cells to coordinate behavior in cellular populations. Inspired by recent experiments, we model the Dictyostelium signaling network as an excitable system coupled to various preprocessing modules. We use this family of models to study spatially unstructured populations of "fixed" cells by constructing phase diagrams that relate the properties of population-level oscillations to parameters in the underlying biochemical network. We then briefly discuss an extension of our model that includes spatial structure and show how this naturally gives rise to spiral waves. Our models exhibit a wide range of novel phenomena. including a density-dependent frequency change, bistability, and dynamic death due to slow cAMP dynamics. Our modeling approach provides a powerful tool for bridging scales in modeling of Dictyostelium populations.

Indexed as

Models, BiologicalCyclic AMPDictyosteliumExtracellular SpaceKineticsSignal TransductionCyclic AMP

Identifiers

PMID26172740
PMCPMC5142844

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.