Evidence map›Paper›PMID 26172574›Full record

ArticleNature communications2015

Self-organizing human cardiac microchambers mediated by geometric confinement.

Zhen Ma, Jason Wang, Peter Loskill, Nathaniel Huebsch, Sangmo Koo, Felicia L Svedlund, Natalie C Marks, Ethan W Hua, Costas P Grigoropoulos, Bruce R Conklin and 1 more

Abstract readVideo-Audio Media
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 121 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
121citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

121 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Engineering the maturation of stem cell-derived cardiomyocytes.Frontiers in bioengineering and biotechnology · 2023
    Pooled it
  2. Pooled it
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  12. Mechanisms and Therapeutic Potential of Human Cardiomyocyte Proliferation.Journal of cardiovascular development and disease · 2026
    Review
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61 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zhen MaDepartment of Bioengineering, University of California, Berkeley, California 94720, USA.
Jason WangDepartment of Bioengineering, University of California, Berkeley, California 94720, USA.
Peter LoskillDepartment of Bioengineering, University of California, Berkeley, California 94720, USA.
Nathaniel HuebschGladstone Institute of Cardiovascular Disease, San Francisco, California 94143, USA.
Sangmo KooDepartment of Mechanical Engineering, University of California, Berkeley, California 94720, USA.
Felicia L SvedlundDepartment of Material Science and Engineering, University of California, Berkeley, California 94720, USA.
Natalie C MarksDepartment of Bioengineering, University of California, Berkeley, California 94720, USA.
Ethan W HuaGladstone Institute of Cardiovascular Disease, San Francisco, California 94143, USA.
Costas P GrigoropoulosDepartment of Mechanical Engineering, University of California, Berkeley, California 94720, USA.
Bruce R ConklinGladstone Institute of Cardiovascular Disease, San Francisco, California 94143, USA.
Kevin E HealyDepartment of Bioengineering, University of California, Berkeley, California 94720, USA.

Funding

Transcriptional Networks During Cardiac DifferentiationP01HL089707 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI SRIVASTAVA, DEEPAK · 2008 to 2017
$20.4M
Surface Analysis Facility for Biomedical ProblemsP41EB002027 · NIBIB · UNIVERSITY OF WASHINGTON · PI CASTNER, DAVID G · 2003 to 2019
$17.6M
The Epigenetic Landscape of Heart DevelopmentU01HL098179 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BOYER, LAURIE A, BRUNEAU, BENOIT GAETAN · 2009 to 2014
$10.0M
Induced Pluripotent Stem Cells in the Understanding and Treatment of Heart DiseasU01HL100406 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BRUNEAU, BENOIT GAETAN, CONKLIN, BRUCE R · 2009 to 2015
$9.4M
Training in Developmental Cardiovascular BiologyT32HL007544 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SRIVASTAVA, DEEPAK · 1985 to 2021
$4.5M
Modeling metabolic interactions of liver and fat with integrated microphysiological systemsUH3TR000487 · NCATS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HEALY, KEVIN EDWARD · 2014 to 2016
$2.9M
Disease Specific Cardiac Tissue ModelsR01HL108677 · NHLBI · UNIVERSITY OF CALIFORNIA BERKELEY · PI CONKLIN, BRUCE R, HEALY, KEVIN EDWARD · 2011 to 2014
$2.4M
Disease-Specific Integrated Microphysiological Human Tissue ModelsUH2TR000487 · NCATS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HEALY, KEVIN EDWARD, LEE, LUKE P. · 2012 to 2013
$1.8M
Enabling Technologies for hES Cell Self-RenewalR01HL096525 · NHLBI · UNIVERSITY OF CALIFORNIA BERKELEY · PI HEALY, KEVIN EDWARD · 2009 to 2013
$1.8M
iPSC Derived Cardiac Microchambers for Embryonic Drug ScreeningR21EB021003 · NIBIB · UNIVERSITY OF CALIFORNIA BERKELEY · PI HEALY, KEVIN EDWARD · 2015 to 2016
$353k
NCATS NIH HHS UH2 TR000487NCATS NIH HHS UH2TR000487NCATS NIH HHS UH3 TR000487NCATS NIH HHS UH3TR000487NHLBI NIH HHS P01 HL089707NHLBI NIH HHS R01 HL096525NHLBI NIH HHS R01HL096525NHLBI NIH HHS R01 HL108677NHLBI NIH HHS R01HL108677NHLBI NIH HHS T32 HL007544NHLBI NIH HHS U01 HL098179NHLBI NIH HHS U01HL098179NHLBI NIH HHS U01 HL100406NHLBI NIH HHS U01HL100406NIBIB NIH HHS EB-002027NIBIB NIH HHS P41 EB002027NIBIB NIH HHS R21 EB021003NIBIB NIH HHS R21EB021003
6 · The paper itself

Abstract

Tissue morphogenesis and organ formation are the consequences of biochemical and biophysical cues that lead to cellular spatial patterning in development. To model such events in vitro, we use PEG-patterned substrates to geometrically confine human pluripotent stem cell colonies and spatially present mechanical stress. Modulation of the WNT/β-catenin pathway promotes spatial patterning via geometric confinement of the cell condensation process during epithelial-mesenchymal transition, forcing cells at the perimeter to express an OCT4+ annulus, which is coincident with a region of higher cell density and E-cadherin expression. The biochemical and biophysical cues synergistically induce self-organizing lineage specification and creation of a beating human cardiac microchamber confined by the pattern geometry. These highly defined human cardiac microchambers can be used to study aspects of embryonic spatial patterning, early cardiac development and drug-induced developmental toxicity.

Indexed as

Epithelial-Mesenchymal TransitionMorphogenesisStress, MechanicalBody PatterningCadherinsCell CountCell DifferentiationCell LineageCell MovementCell ProliferationCuesHeartHumansInduced Pluripotent Stem CellsIn Vitro TechniquesModels, CardiovascularCadherins

Identifiers

PMID26172574
PMCPMC4503387

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.