Evidence map›Paper›PMID 26171757›Full record

ArticleGenes, chromosomes & cancer2015

Near universal detection of alterations in CTNNB1 and Wnt pathway regulators in desmoid-type fibromatosis by whole-exome sequencing and genomic analysis.

Aimee M Crago, Juliann Chmielecki, Mara Rosenberg, Rachael O'Connor, Caitlin Byrne, Fatima G Wilder, Katherine Thorn, Phaedra Agius, Deborah Kuk, Nicholas D Socci and 4 more

Abstract read
In one paragraph

Article in Genes, chromosomes & cancer, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 167 citations in OpenAlex.

  1. Review
  2. Intra-Abdominal Sporadic Desmoid Tumors with CanonicalInternational journal of molecular sciences · 2026
    Article
  3. Review
  4. Article
  5. Desmoid fibromatosis in a child with DICER1-related tumor predisposition.Virchows Archiv : an international journal of pathology · 2026
    Article
  6. Article
  7. Article
  8. Management of Desmoid Tumors.Current oncology reports · 2025
    Review
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Active Surveillance in Patients with Extra-abdominal Desmoid-Type Fibromatosis: A Pooled Analysis of Three Prospective Observational Studies.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Observational
  15. Review
  16. Genomic, Epigenomic, and Transcriptomic Inter- and Intratumor Heterogeneity in Desmoid Tumors.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Aimee M CragoSarcoma Biology Laboratory and Sarcoma Disease Management Program, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY.
Juliann ChmieleckiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA.
Mara RosenbergCancer Program, Broad Institute of Harvard and MIT, Cambridge, MA.
Rachael O'ConnorSarcoma Biology Laboratory and Sarcoma Disease Management Program, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY.
Caitlin ByrneBioinformatics Core, Memorial Sloan Kettering Cancer Center, New York, NY.
Fatima G WilderSarcoma Biology Laboratory and Sarcoma Disease Management Program, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY.
Katherine ThornSarcoma Biology Laboratory and Sarcoma Disease Management Program, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY.
Phaedra AgiusBioinformatics Core, Memorial Sloan Kettering Cancer Center, New York, NY.
Deborah KukBiostatistics and Epidemiology, Memorial Sloan Kettering Cancer Center, New York, NY.
Nicholas D SocciBioinformatics Core, Memorial Sloan Kettering Cancer Center, New York, NY.
Li-Xuan QinBiostatistics and Epidemiology, Memorial Sloan Kettering Cancer Center, New York, NY.
Matthew MeyersonDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA.
Meera HameedDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.
Samuel SingerSarcoma Biology Laboratory and Sarcoma Disease Management Program, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY.
Memorial Sloan Kettering Cancer Center · USSarcoma Oncology Center · USBroad Institute · USCornell University · USDana-Farber Cancer Institute · USHarvard University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
SPORE in Soft Tissue SarcomaP50CA140146 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SPRIGGS, DAVID R · 2010 to 2014
$11.1M
NCI NIH HHS P30 CA008748NCI NIH HHS P30-CA008748NCI NIH HHS P50 CA140146NCI NIH HHS P50-CA140146
6 · The paper itself

Abstract

CTNNB1 mutations or APC abnormalities have been observed in ∼85% of desmoids examined by Sanger sequencing and are associated with Wnt/β-catenin activation. We sought to identify molecular aberrations in "wild-type" tumors (those without CTNNB1 or APC alteration) and to determine their prognostic relevance. CTNNB1 was examined by Sanger sequencing in 117 desmoids; a mutation was observed in 101 (86%) and 16 were wild type. Wild-type status did not associate with tumor recurrence. Moreover, in unsupervised clustering based on U133A-derived gene expression profiles, wild-type and mutated tumors clustered together. Whole-exome sequencing of eight of the wild-type desmoids revealed that three had a CTNNB1 mutation that had been undetected by Sanger sequencing. The mutation was found in a mean 16% of reads (vs. 37% for mutations identified by Sanger). Of the other five wild-type tumors sequenced, two had APC loss, two had chromosome 6 loss, and one had mutation of BMI1. The finding of low-frequency CTNNB1 mutation or APC loss in wild-type desmoids was validated in the remaining eight wild-type desmoids; directed miSeq identified low-frequency CTNNB1 mutation in four and comparative genomic hybridization identified APC loss in one. These results demonstrate that mutations affecting CTNNB1 or APC occur more frequently in desmoids than previously recognized (111 of 117; 95%), and designation of wild-type genotype is largely determined by sensitivity of detection methods. Even true CTNNB1 wild-type tumors (determined by next-generation sequencing) may have genomic alterations associated with Wnt activation (chromosome 6 loss/BMI1 mutation), supporting Wnt/β-catenin activation as the common pathway governing desmoid initiation.

Indexed as

Exomebeta CateninCarcinogenesisChromosomes, Human, Pair 6Desmoid TumorsGene DosageGenomicsHigh-Throughput Nucleotide SequencingHumansMutationWnt Proteinsbeta CateninCTNNB1 protein, humanWnt Proteins

Identifiers

PMID26171757
PMCPMC4548882
OpenAlexW1798211820

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.