Evidence map›Paper›PMID 26170324›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

How osmolytes influence hydrophobic polymer conformations: A unified view from experiment and theory.

Jagannath Mondal, Duncan Halverson, Isaac T S Li, Guillaume Stirnemann, Gilbert C Walker, Bruce J Berne

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 131 citations in OpenAlex.

  1. Article
  2. Trigger factor accelerates nascent chain compaction and folding.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
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  6. Trimethylamine-N-oxide depletes urea in a peptide solvation shell.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Influence of TMAO as co-solvent on the gelation of silica-PNIPAm core-shell nanogels at intermediate volume fractions.Chemphyschem : a European journal of chemical physics and physical chemistry · 2020
    Article
  13. Nanomechanical properties of steric zipper globular structures.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Osmolyte-Induced Folding and Stability of Proteins: Concepts and Characterization.Iranian journal of pharmaceutical research : IJPR · 2019
    Review
  15. Article
  16. Article
  17. TrimethylamineProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 4 countries.

Jagannath MondalDepartment of Chemistry, Columbia University, New York, NY 10027; TIFR Centre for Interdisciplinary Sciences, Narsingi, Hyderabad 500075, India;
Duncan HalversonDepartment of Chemistry, University of Toronto, ON, Canada M5S 3HS;
Isaac T S LiDepartment of Chemistry, University of Toronto, ON, Canada M5S 3HS;
Guillaume StirnemannCNRS - Institut de Biologie Physico-Chimique - PSL Research University, Laboratoire de Biochimie Théorique, 75005 Paris, France.
Gilbert C WalkerDepartment of Chemistry, University of Toronto, ON, Canada M5S 3HS;
Bruce J BerneDepartment of Chemistry, Columbia University, New York, NY 10027; bb8@columbia.edu.
University of Toronto · CAColumbia University · USTata Institute of Fundamental Research · INUniversité Paris Sciences et Lettres · FR

Funding

NIGMS NIH HHS NIH-GM4330
6 · The paper itself

Abstract

It is currently the consensus belief that protective osmolytes such as trimethylamine N-oxide (TMAO) favor protein folding by being excluded from the vicinity of a protein, whereas denaturing osmolytes such as urea lead to protein unfolding by strongly binding to the surface. Despite there being consensus on how TMAO and urea affect proteins as a whole, very little is known as to their effects on the individual mechanisms responsible for protein structure formation, especially hydrophobic association. In the present study, we use single-molecule atomic force microscopy and molecular dynamics simulations to investigate the effects of TMAO and urea on the unfolding of the hydrophobic homopolymer polystyrene. Incorporated with interfacial energy measurements, our results show that TMAO and urea act on polystyrene as a protectant and a denaturant, respectively, while complying with Tanford-Wyman preferential binding theory. We provide a molecular explanation suggesting that TMAO molecules have a greater thermodynamic binding affinity with the collapsed conformation of polystyrene than with the extended conformation, while the reverse is true for urea molecules. Results presented here from both experiment and simulation are in line with earlier predictions on a model Lennard-Jones polymer while also demonstrating the distinction in the mechanism of osmolyte action between protein and hydrophobic polymer. This marks, to our knowledge, the first experimental observation of TMAO-induced hydrophobic collapse in a ternary aqueous system.

Indexed as

Computer SimulationHydrophobic and Hydrophilic InteractionsMethylaminesMicroscopy, Atomic ForceMolecular Dynamics SimulationNormal DistributionPolymersPolystyrenesProtein BindingProtein ConformationProtein FoldingProteinsSoftwareSolventsStress, MechanicalThermodynamicsMethylaminesPolymersPolystyrenesProteinsSolventstrimethyloxamineUreaWaterfree energypreferential bindingsingle-molecule force spectroscopyTMAOurea

Identifiers

PMID26170324
PMCPMC4522754
OpenAlexW1898186760

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.