Evidence map›Paper›PMID 26169681›Full record

ArticlePlant physiology2015

Acylphloroglucinol Biosynthesis in Strawberry Fruit.

Chuankui Song, Ludwig Ring, Thomas Hoffmann, Fong-Chin Huang, Janet Slovin, Wilfried Schwab

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Answering biological questions by analysis of the strawberry metabolome.Metabolomics : Official journal of the Metabolomic Society · 2018
    Review
  7. Article
  8. Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Chuankui SongBiotechnology of Natural Products, Technische Universität München, 85354 Freising, Germany (C.S., L.R., T.H., F.-C.H., W.S.); andUnited States Department of Agriculture/Agricultural Research Service Genetic Improvement of Fruits and Vegetables Laboratory, Beltsville 20705, Maryland (J.S.).
Ludwig RingBiotechnology of Natural Products, Technische Universität München, 85354 Freising, Germany (C.S., L.R., T.H., F.-C.H., W.S.); andUnited States Department of Agriculture/Agricultural Research Service Genetic Improvement of Fruits and Vegetables Laboratory, Beltsville 20705, Maryland (J.S.).
Thomas HoffmannBiotechnology of Natural Products, Technische Universität München, 85354 Freising, Germany (C.S., L.R., T.H., F.-C.H., W.S.); andUnited States Department of Agriculture/Agricultural Research Service Genetic Improvement of Fruits and Vegetables Laboratory, Beltsville 20705, Maryland (J.S.).
Fong-Chin HuangBiotechnology of Natural Products, Technische Universität München, 85354 Freising, Germany (C.S., L.R., T.H., F.-C.H., W.S.); andUnited States Department of Agriculture/Agricultural Research Service Genetic Improvement of Fruits and Vegetables Laboratory, Beltsville 20705, Maryland (J.S.).
Janet SlovinBiotechnology of Natural Products, Technische Universität München, 85354 Freising, Germany (C.S., L.R., T.H., F.-C.H., W.S.); andUnited States Department of Agriculture/Agricultural Research Service Genetic Improvement of Fruits and Vegetables Laboratory, Beltsville 20705, Maryland (J.S.).ORCID http://orcid.org/0000-0001-6609-7034
Wilfried SchwabBiotechnology of Natural Products, Technische Universität München, 85354 Freising, Germany (C.S., L.R., T.H., F.-C.H., W.S.); andUnited States Department of Agriculture/Agricultural Research Service Genetic Improvement of Fruits and Vegetables Laboratory, Beltsville 20705, Maryland (J.S.) wilfried.schwab@tum.de.ORCID http://orcid.org/0000-0002-9753-3967
United States Department of Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phenolics have health-promoting properties and are a major group of metabolites in fruit crops. Through reverse genetic analysis of the functions of four ripening-related genes in the octoploid strawberry (Fragaria × ananassa), we discovered four acylphloroglucinol (APG)-glucosides as native Fragaria spp. fruit metabolites whose levels were differently regulated in the transgenic fruits. The biosynthesis of the APG aglycones was investigated by examination of the enzymatic properties of three recombinant Fragaria vesca chalcone synthase (FvCHS) proteins. CHS is involved in anthocyanin biosynthesis during ripening. The F. vesca enzymes readily catalyzed the condensation of two intermediates in branched-chain amino acid metabolism, isovaleryl-Coenzyme A (CoA) and isobutyryl-CoA, with three molecules of malonyl-CoA to form phlorisovalerophenone and phlorisobutyrophenone, respectively, and formed naringenin chalcone when 4-coumaroyl-CoA was used as starter molecule. Isovaleryl-CoA was the preferred starter substrate of FvCHS2-1. Suppression of CHS activity in both transient and stable CHS-silenced fruit resulted in a substantial decrease of APG glucosides and anthocyanins and enhanced levels of volatiles derived from branched-chain amino acids. The proposed APG pathway was confirmed by feeding isotopically labeled amino acids. Thus, Fragaria spp. plants have the capacity to synthesize pharmaceutically important APGs using dual functional CHS/(phloriso)valerophenone synthases that are expressed during fruit ripening. Duplication and adaptive evolution of CHS is the most probable scenario and might be generally applicable to other plants. The results highlight that important promiscuous gene function may be missed when annotation relies solely on in silico analysis.

Indexed as

FragariaFruitGene Expression Regulation, PlantGene SilencingGlucosidesMolecular StructurePhloroglucinolPigments, BiologicalPlant ProteinsTranscriptomeGlucosidesPhloroglucinolPigments, BiologicalPlant Proteins

Identifiers

PMID26169681
PMCPMC4634061
OpenAlexW1960301977

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.