Evidence map›Paper›PMID 26168401›Full record

ArticleNature2015

Transcriptional control of autophagy-lysosome function drives pancreatic cancer metabolism.

Rushika M Perera, Svetlana Stoykova, Brandon N Nicolay, Kenneth N Ross, Julien Fitamant, Myriam Boukhali, Justine Lengrand, Vikram Deshpande, Martin K Selig, Cristina R Ferrone and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 539 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
539citing papers in PubMed, 1 pooled it
47.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

539 citing papers in PubMed, 1 synthesis or guideline pooled it, 782 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Loss of UFL1 drives chromosome instability and tumorigenesis of prostate cancer.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article

479 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Rushika M PereraCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Svetlana StoykovaCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Brandon N NicolayCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Kenneth N RossCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Julien FitamantCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Myriam BoukhaliCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Justine LengrandCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Vikram DeshpandeDepartment of Medicine, Harvard Medical School, Boston, Massachusetts 02114, USA.
Martin K SeligDepartment of Pathology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Cristina R FerroneCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Jeff SettlemanCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Gregory StephanopoulosDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Nicholas J DysonCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Roberto ZoncuDepartment of Molecular and Cell Biology, University of California at Berkeley, Berkeley, California 94720, USA.
Sridhar RamaswamyCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Wilhelm HaasCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Nabeel BardeesyCenter for Cancer Research, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Massachusetts General Hospital · USCenter for Cancer Research · USHarvard University · USMassachusetts Institute of Technology · USUniversity of California, Berkeley · US

Funding

The RAS and P13K Pathways in Pancreatic AdenocarcinomaP01CA117969 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DEPINHO, RONALD ANTHONY · 2006 to 2025
$41.7M
Tissue and Pathology ResourcesP50CA127003 · NCI · DANA-FARBER CANCER INST · PI EL-BARDEESY, NABEEL, SELLERS, WILLIAM R · 2007 to 2023
$33.2M
ENGINEERING ORGANELLE FUNCTION TO REWIRE CANCER CELL METABOLISMDP2CA195761 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZONCU, ROBERTO · 2014 to 2014
$2.4M
TGF-beta Signaling in Pancreatic CancerR01CA133557 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI EL-BARDEESY, NABEEL · 2008 to 2013
$1.7M
NCI NIH HHS DP2 CA195761NCI NIH HHS P01 CA117969NCI NIH HHS P01 CA117969-07NCI NIH HHS P50CA1270003NCI NIH HHS P50 CA127003NCI NIH HHS R01 CA133557NCI NIH HHS R01 CA133557-05
6 · The paper itself

Abstract

Activation of cellular stress response pathways to maintain metabolic homeostasis is emerging as a critical growth and survival mechanism in many cancers. The pathogenesis of pancreatic ductal adenocarcinoma (PDA) requires high levels of autophagy, a conserved self-degradative process. However, the regulatory circuits that activate autophagy and reprogram PDA cell metabolism are unknown. Here we show that autophagy induction in PDA occurs as part of a broader transcriptional program that coordinates activation of lysosome biogenesis and function, and nutrient scavenging, mediated by the MiT/TFE family of transcription factors. In human PDA cells, the MiT/TFE proteins--MITF, TFE3 and TFEB--are decoupled from regulatory mechanisms that control their cytoplasmic retention. Increased nuclear import in turn drives the expression of a coherent network of genes that induce high levels of lysosomal catabolic function essential for PDA growth. Unbiased global metabolite profiling reveals that MiT/TFE-dependent autophagy-lysosome activation is specifically required to maintain intracellular amino acid pools. These results identify the MiT/TFE proteins as master regulators of metabolic reprogramming in pancreatic cancer and demonstrate that transcriptional activation of clearance pathways converging on the lysosome is a novel hallmark of aggressive malignancy.

Indexed as

Gene Expression Regulation, NeoplasticActive Transport, Cell NucleusAmino AcidsAnimalsAutophagyBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCarcinoma, Pancreatic DuctalCell Line, TumorEnergy MetabolismFemaleHeterograftsHomeostasisHumansLysosomesMiceMicrophthalmia-Associated Transcription FactorAmino AcidsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsMicrophthalmia-Associated Transcription FactorMITF protein, humanTFE3 protein, humanTFEB protein, humanTranscription Factors

Identifiers

PMID26168401
PMCPMC5086585
OpenAlexW1678795445

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.