ArticleJournal of pathology informatics2015
Biomedical imaging ontologies: A survey and proposal for future work.
Article in Journal of pathology informatics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Population health management fit lifecycles in analytics.Frontiers in artificial intelligence · 2025Article
- A framework for integrating biomedical knowledge in Wikidata with open biological and biomedical ontologies and MeSH keywords.Heliyon · 2024Article
- Making Biomedical Sciences publications more accessible for machines.Medicine, health care, and philosophy · 2022Article
- Surgical data science - from concepts toward clinical translation.Medical image analysis · 2022Review
- Biomedical Ontologies to Guide AI Development in Radiology.Journal of digital imaging · 2021Review
- COVID-19 Biomarkers in research: Extension of the OncoMX cancer biomarker data model to capture biomarker data from other diseases.bioRxiv : the preprint server for biology · 2020Article
- Artificial intelligence driven next-generation renal histomorphometry.Current opinion in nephrology and hypertension · 2020Review
- A semantic database for integrated management of image and dosimetric data in low radiation dose research in medical imaging.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2020Article
- BioSCOOP - Biobank Sample Communication Protocol. New approach for the transfer of information between biobanks.Database : the journal of biological databases and curation · 2019Article
- Annotations, Ontologies, and Whole Slide Images - Development of an Annotated Ontology-Driven Whole Slide Image Library of Normal and Abnormal Human Tissue.Journal of pathology informatics · 2019Article
- Translational Radiomics: Defining the Strategy Pipeline and Considerations for Application-Part 1: From Methodology to Clinical Implementation.Journal of the American College of Radiology : JACR · 2018Review
- Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem.Journal of biomedical informatics · 2017Article
- Developing a knowledge base to support the annotation of ultrasound images of ectopic pregnancy.Journal of biomedical semantics · 2017Article
- Imaging Informatics: 25 Years of Progress.Yearbook of medical informatics · 2016Article
- PhenoImageShare: an image annotation and query infrastructure.Journal of biomedical semantics · 2016Article
Corrections and comments
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Authors and funding
12 authors.
Funding
Abstract
backgroundOntology is one strategy for promoting interoperability of heterogeneous data through consistent tagging. An ontology is a controlled structured vocabulary consisting of general terms (such as "cell" or "image" or "tissue" or "microscope") that form the basis for such tagging. These terms are designed to represent the types of entities in the domain of reality that the ontology has been devised to capture; the terms are provided with logical definitions thereby also supporting reasoning over the tagged data.
aimThis paper provides a survey of the biomedical imaging ontologies that have been developed thus far. It outlines the challenges, particularly faced by ontologies in the fields of histopathological imaging and image analysis, and suggests a strategy for addressing these challenges in the example domain of quantitative histopathology imaging. RESULTS AND
conclusionsThe ultimate goal is to support the multiscale understanding of disease that comes from using interoperable ontologies to integrate imaging data with clinical and genomics data.
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