Evidence map›Paper›PMID 26166901›Full record

ArticlePlant and soil

Arabinose and protocatechuate catabolism genes are important for growth of

Paula Garcia-Fraile, Jonathan C Seaman, Ramakrishnan Karunakaran, Anne Edwards, Philip S Poole, J Allan Downie

Open access · hybridAbstract read
In one paragraph

Article in Plant and soil. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. AFrontiers in systems biology · 2025
    Article
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  4. Article
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  6. How Rhizobia Adapt to the Nodule Environment.Journal of bacteriology · 2021
    Article
  7. Bacterial Fertilizers Based onFoods (Basel, Switzerland) · 2021
    Article
  8. Article
  9. Article
  10. Review
  11. Rhizobia: from saprophytes to endosymbionts.Nature reviews. Microbiology · 2018
    Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Paula Garcia-FraileDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK ; Institute of Microbiology, Academy of Sciences of Czech Republic, Videnska 1083, 142 20 Prague, Czech Republic.
Jonathan C SeamanSchool of Biological Sciences, University of Reading, Reading, RG6 6AJ UK.
Ramakrishnan KarunakaranDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK.
Anne EdwardsDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK.
Philip S PooleDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK ; Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB UK.
J Allan DownieDepartment of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK.
John Innes Centre · GBNorwich Research Park · GBUniversity of Oxford · GBUniversity of Reading · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C517025/2Biotechnology and Biological Sciences Research Council BBS/E/J/00000012Biotechnology and Biological Sciences Research Council P19980
6 · The paper itself

Abstract

BACKGROUND AND

aimsTo form nitrogen-fixing nodules on pea roots,

methodsSignature-tagged mutants were screened using microarrays to identify mutants reduced for growth in pea rhizospheres. Candidate mutants were assessed relative to controls for growth in minimal medium, growth in pea rhizospheres and for infection of peas in mixed inoculants. Mutated genes were identified by DNA sequencing and confirmed by transduction.

resultsOf 5508 signature-tagged mutants, microarrays implicated 50 as having decreased rhizosphere fitness. Growth tests identified six mutants with rhizosphere-specific phenotypes. The mutation in one of the genes

conclusionsCatabolism of arabinose and protocatechuate in the pea rhizosphere is important for competitiveness of

Indexed as

Competitive nodule infectionLegume nodulationPisumRhizosphere fitness

Identifiers

PMID26166901
PMCPMC4495286
OpenAlexW2068981339

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.